Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2495 ATGGGGTCTGTGGAAGAGAAGCTCAAGACAAATGGGGGATTGGTCAATCATGTCTCACAGACTAACCTTCTTGATGAGATGAAGTTGTTGAAGGAAATCCAAGATCAAACAGGGTCTAGGAAGGCTATGAACTCTGAGCTATGGCATGCTTGTGCTGGTCCGCTTGTTTCCTTGCCCCATGTGGGGAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCCGTTTCTACTAATAGAATAGCAACCTCACAGATTCCAAATTATCCCTATCTCCCCTCTCAGTTGATGTGTCAAGTTCATAATGTTACCTTACATGCTGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCAGTGAATTCTGAAAAAGATGTATTTTTAGTTCCGGATTTTGGATTAAGGCCGAGTAAACATCCAAACGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACCAGCACTCATGGTGGTTTTTCAGTGCCACGCAGGGCTGCTGAAAAGCTCTTTCCTCCATTGGATTACACAATGCAACCACCAACTCAAGAGCTCGTGGTTCGAGACTTGCACGACAATGCCTGGACGTTTCGCCACATATATCGTGGGCAGCCGAAGCGACACCTTCTCACAACCGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAGAAGTCCCAGTTGCTCATCGGAGTGAGGCGTGCTAGCCGGCAACAAACGACTCTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATTGGGGTTCTTGCTGCTGCAGCTCATGCTGCTTCTAATCGGATCCCATTCACTATCTTCTACAACCCCAGGGCATGTCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTATCGCAAATGCGTGTACGGTACTCAGCTGTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCTGGTAAACGCCGGTATATGGGAACCATTGTTGGAGTTAGCGATTTAGATCAACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGATGAACCAGGGTGCTGTGATAAGCAGAAAAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCCTCTTTAACTTCAGGTCTTAAACGTCCATTGCACAATGGATTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTAGCATTCCTGAAAATGTACGCGGGGATCTTTCATATGCGTCGAATTTATGCTCGGAACCACTGATGAAGATGCTAATGAGGCCTCAAATGGTTAACCTTCAGGGTGCCACCTTACAGCAGGATTCATCTAACAATTTAGCTAAACTACAGGACATGAAAGATGTGCAACCTGTAACCAATCCCAACATGCTGCAGCAGCAGCAGCAGCAGCTGGTATCAACTGAAACCGGATCTCCTCAGAATCACAACCATCATCATTCGAAACCTATGCCATTGGATCCCATAAACTCTAATTCATCACCACAAGAAAAGCCATTAGAAAAAGTACAGCCTTCGGTGGCCGTTGAAAGTGAAGATCCAACTGGAACCACTGATGTAGACAAGGCGAAATATGAATGTGAACTTTCGACCGATCAGTCTAATCCGTTGCCCTCGGTTGGAGGTTGTGTGGAAGAAAAGCTCACCAGTAACGAAGTGAATATGCAGACCCTTGTGAACCAGCTTTCATTTGTGAACCAGAATCAAATACCTATGCAGTTGCAGTCTGCATCATGGCCTATGCAGCCTCAGCTGGAATCCCTAATCCAACACCAACAATCAATTGACATGCCTCAGCCTGAGTTTCTCAATTCAAATGGTTTGGTTTCAACACTGGATGGTGATGGATGTTTGATTAATCCAACTTGTCTGCCTCTTTCTGGAGTAATGAGATCACCAGGGAATATCTCTATGTTGGGATTGCAAGACTCCTCAACAATGTTCCCTGAGGCTCTGAACTTTCCCTTACCTTCTATAGGTCAAGACATGTGGGATCCTTTTAATATGCGATTCTTGTCGCAGAGCAATCATCTCGTCTCATTTTCCCATCCAGATGCATCAAACCTGAACTGTCTAGCGAATGAAAATGCTATGAGAGATGTTTCAGATGAGAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACATCGAAATCAGTAATGTTGGAAGTGCTTTGGTTGATCATGCTGTTTCGAGCACCATTCTCGATGATTACTGCACGTTGAAGGAGGCCAATTTCCCACACCCTTCAGATTGCTTGGCTGGAACCTTCAGTTCGAGCCAAGATATCCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCTAGGCAAGAGTTTCATGATAATTCGGGTGGTACGTCCTCGTGCAATGTGGATTTTGATGAGGGCAATCTTCTGCAGAATGGCTCCTGGAAGCAGGTTGTACCCTTGAGGACTTACACTAAGGTTCAGCGGACAGGATCGGTTGGGAGATCTATCGATGTCACTAGTTTTAAGAACTACGACCAATTATGCTCTGCTATCGAATGTATGTTCGGACTTGAAGGGTTGCTTAACGACCCTAGAGGCTCAGGATGGAAACTAGTTTATGTCGATTACGAGAATGATGTCCTGCTTATTGGGGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAGGGCATGAATTGCTCCACATCAGAAGGCGGTCGAGCTTAA 2862 45.25 MGSVEEKLKTNGGLVNHVSQTNLLDEMKLLKEIQDQTGSRKAMNSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTNRIATSQIPNYPYLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRASRQQTTLPSSVLSADSMHIGVLAAAAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGVSDLDQLRWPGSKWRNLQVEWDEPGCCDKQKRVSSWEIETPESLFIFPSLTSGLKRPLHNGFLGETDWGSLVKRPMLSIPENVRGDLSYASNLCSEPLMKMLMRPQMVNLQGATLQQDSSNNLAKLQDMKDVQPVTNPNMLQQQQQQLVSTETGSPQNHNHHHSKPMPLDPINSNSSPQEKPLEKVQPSVAVESEDPTGTTDVDKAKYECELSTDQSNPLPSVGGCVEEKLTSNEVNMQTLVNQLSFVNQNQIPMQLQSASWPMQPQLESLIQHQQSIDMPQPEFLNSNGLVSTLDGDGCLINPTCLPLSGVMRSPGNISMLGLQDSSTMFPEALNFPLPSIGQDMWDPFNMRFLSQSNHLVSFSHPDASNLNCLANENAMRDVSDESNNQSGIYSCSNIEISNVGSALVDHAVSSTILDDYCTLKEANFPHPSDCLAGTFSSSQDIQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGNLLQNGSWKQVVPLRTYTKVQRTGSVGRSIDVTSFKNYDQLCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGMNCSTSEGGRA 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18647969 18654048 - Sed0018524.1 Sed01g2495 701799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2495 953 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Sed01g2495 953 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Sed01g2495 953 Gene3D - 835 928 - -
Sed01g2495 953 Gene3D - 147 250 IPR015300 -
Sed01g2495 953 FunFam Auxin response factor 313 385 - -
Sed01g2495 953 FunFam Auxin response factor 147 251 - -
Sed01g2495 953 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Sed01g2495 953 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 931 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g2495 953 FunFam Auxin response factor 834 928 - -
Sed01g2495 953 Pfam AUX/IAA family 839 927 IPR033389 -
Sed01g2495 953 ProSiteProfiles PB1 domain profile. 839 923 IPR053793 -
Sed01g2495 953 MobiDBLite consensus disorder prediction 482 502 - -
Sed01g2495 953 Gene3D - 313 385 - -
Sed01g2495 953 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g2495 953 SUPERFAMILY CAD & PB1 domains 835 918 - -
Sed01g2495 953 MobiDBLite consensus disorder prediction 509 523 - -
Sed01g2495 953 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Sed01g2495 953 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Sed01g2495 953 MobiDBLite consensus disorder prediction 482 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2495 Sed-Chr1:18647969 Sed08g2648 Sed-Chr8:38656979 3.60E-168 dispersed
Sed01g2495 Sed-Chr1:18647969 Sed01g2496 Sed-Chr1:18647969 0.00E+00 tandem
Sed01g2495 Sed-Chr1:18647969 Sed13g1578 Sed-Chr13:20953766 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37298 PF02362 B3 1.90E-20 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2495 K14486 - csv:101216825 1679.07