Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2496 ATGGGGTCTGTGGAAGAGAAGCTCAAGACAAATGGGGGATTGGTCAATCATGTCTCACAGACTAACCTTCTTGATGAGATGAAGTTGTTGAAGGAAATCCAAGATCAAACAGGGTCTAGGAAGGCTATGAACTCTGAGCTATGGCATGCTTGTGCTGGTCCGCTTGTTTCCTTGCCCCATGTGGGGAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCCGTTTCTACTAATAGAATAGCAACCTCACAGATTCCAAATTATCCCTATCTCCCCTCTCAGTTGATGTGTCAAGTTCATAATGTTACCTTACATGCTGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCAGTGAATTCTGAAAAAGATGTATTTTTAGTTCCGGATTTTGGATTAAGGCCGAGTAAACATCCAAACGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACCAGCACTCATGGTGGTTTTTCAGTGCCACGCAGGGCTGCTGAAAAGCTCTTTCCTCCATTGGATTACACAATGCAACCACCAACTCAAGAGCTCGTGGTTCGAGACTTGCACGACAATGCCTGGACGTTTCGCCACATATATCGTGGGCAGCCGAAGCGACACCTTCTCACAACCGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAGAAGTCCCAGTTGCTCATCGGAGTGAGGCGTGCTAGCCGGCAACAAACGACTCTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATTGGGGTTCTTGCTGCTGCAGCTCATGCTGCTTCTAATCGGATCCCATTCACTATCTTCTACAACCCCAGGGCATGTCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTATCGCAAATGCGTGTACGGTACTCAGCTGTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCTGGTAAACGCCGGTATATGGGAACCATTGTTGGAGTTAGCGATTTAGATCAACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGATGAACCAGGGTGCTGTGATAAGCAGAAAAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCCTCTTTAACTTCAGGTCTTAAACGTCCATTGCACAATGGATTCTTGGCAGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTAGCATTCCTGAAAATGTACGCGGGGATCTTTCATATGCGTCGAATTTATGCTCGGAACCACTGATGAAGATGCTAATGAGGCCTCAAATGGTTAACCTTCAGGGTGCCACCTTACAGCAGGATTCATCTAACAATTTAGCTAAACTACAGGACATGAAAGATGTGCAACCTGTAACCAATCCCAACATGCTGCAGCAGCAGCAGCAGCAGCTGGTATCAACTGAAACCGGATCTCCTCAGAATCACAACCATCATCATTCGAAACCTATGCCATTGGATCCCATAAACTCTAATTCATCACCACAAGAAAAGCCATTAGAAAAAGTACAGCCTTCGGTGGCCGTTGAAAGTGAAGATCCAACTGGAACCACTGATGTAGACAAGGCGAAATATGAATGTGAACTTTCGACCGATCAGTCTAATCCGTTGCCCTCGGTTGGAGGTTGTGTGGAAGAAAAGCTCACCAGTAACGAAGTGAATATGCAGACCCTTGTGAACCAGCTTTCATTTGTGAACCAGAATCAAATACCTATGCAGTTGCAGTCTGCATCATGGCCTATGCAGCCTCAGCTGGAATCCCTAATCCAACACCAACAATCAATTGACATGCCTCAGCCTGAGTTTCTCAATTCAAATGGTTTGGTTTCAACACTGGATGGTGATGGATGTTTGATTAATCCAACTTGTCTGCCTCTTTCTGGAGTAATGAGATCACCAGGGAATATCTCTATGTTGGGATTGCAAGACTCCTCAACAATGTTCCCTGAGGCTCTGAACTTTCCCTTACCTTCTATAGGTCAAGACATGTGGGATCCTTTTAATATGCGATTCTTGTCGCAGAGCAATCATCTCGTCTCATTTTCCCATCCAGATGCATCAAACCTGAACTGTCTAGCGAATGAAAATGCTATGAGAGATGTTTCAGATGAGAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACATCGAAATCAGTAATGTTGGAAGTGCTTTGGTTGATCATGCTGTTTCGAGCACCATTCTCGATGATTACTGCACGTTGAAGGAGGCCAATTTCCCACACCCTTCAGATTGCTTGGCTGGAACCTTCAGTTCGAGCCAAGATATCCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCTAGGCAAGAGTTTCATGATAATTCGGGTGGTACGTCCTCGTGCAATGTGGATTTTGATGAGGGCAATCTTCTGCAGAATGGCTCCTGGAAGCAGGTTGTACCCTTGAGGACTTACACTAAGGTTCAGCGGACAGGATCGGTTGGGAGATCTATCGATGTCACTAGTTTTAAGAACTACGACCAATTATGCTCTGCTATCGAATGTATGTTCGGACTTGAAGGGTTGCTTAACGACCCTAGAGGCTCAGGATGGAAACTAGTTTATGTCGATTACGAGAATGATGTCCTGCTTATTGGGGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAGGGCATGAATTGCTCCACATCAGAAGGCGGTCGAGCTTAA 2865 45.27 MGSVEEKLKTNGGLVNHVSQTNLLDEMKLLKEIQDQTGSRKAMNSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTNRIATSQIPNYPYLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRASRQQTTLPSSVLSADSMHIGVLAAAAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGVSDLDQLRWPGSKWRNLQVEWDEPGCCDKQKRVSSWEIETPESLFIFPSLTSGLKRPLHNGFLAGETDWGSLVKRPMLSIPENVRGDLSYASNLCSEPLMKMLMRPQMVNLQGATLQQDSSNNLAKLQDMKDVQPVTNPNMLQQQQQQLVSTETGSPQNHNHHHSKPMPLDPINSNSSPQEKPLEKVQPSVAVESEDPTGTTDVDKAKYECELSTDQSNPLPSVGGCVEEKLTSNEVNMQTLVNQLSFVNQNQIPMQLQSASWPMQPQLESLIQHQQSIDMPQPEFLNSNGLVSTLDGDGCLINPTCLPLSGVMRSPGNISMLGLQDSSTMFPEALNFPLPSIGQDMWDPFNMRFLSQSNHLVSFSHPDASNLNCLANENAMRDVSDESNNQSGIYSCSNIEISNVGSALVDHAVSSTILDDYCTLKEANFPHPSDCLAGTFSSSQDIQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGNLLQNGSWKQVVPLRTYTKVQRTGSVGRSIDVTSFKNYDQLCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGMNCSTSEGGRA 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18647969 18654048 - Sed0018524.2 Sed01g2496 701800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2496 954 MobiDBLite consensus disorder prediction 510 524 - -
Sed01g2496 954 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Sed01g2496 954 FunFam Auxin response factor 835 929 - -
Sed01g2496 954 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Sed01g2496 954 Gene3D - 147 250 IPR015300 -
Sed01g2496 954 MobiDBLite consensus disorder prediction 483 544 - -
Sed01g2496 954 FunFam Auxin response factor 313 385 - -
Sed01g2496 954 SUPERFAMILY CAD & PB1 domains 836 919 - -
Sed01g2496 954 ProSiteProfiles PB1 domain profile. 840 924 IPR053793 -
Sed01g2496 954 Pfam AUX/IAA family 840 928 IPR033389 -
Sed01g2496 954 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 932 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g2496 954 FunFam Auxin response factor 147 251 - -
Sed01g2496 954 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Sed01g2496 954 Gene3D - 836 929 - -
Sed01g2496 954 Gene3D - 313 385 - -
Sed01g2496 954 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g2496 954 MobiDBLite consensus disorder prediction 483 503 - -
Sed01g2496 954 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Sed01g2496 954 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2496 Sed-Chr1:18647969 Sed13g1578 Sed-Chr13:20953766 0.00E+00 dispersed
Sed01g2495 Sed-Chr1:18647969 Sed01g2496 Sed-Chr1:18647969 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37299 PF02362 B3 1.90E-20 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2496 K14486 - csv:101216825 1685.23