Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2503 ATGTCTCTCGTCTTTAAGCTCCAAATCGCCATTTCTCCTCAAATCACCACCCTCAACAAAAAAACCCCAGTTACTTCTTACTACACCAAGATTAAATCCAAACCCATTTACGTTTCTGAGCCTTTGAGGATCAAGCCCGCAATGCAGAGCCATTCGCCGCCGCGTTCGTCCATCAAGAGCTCGCTGATCGAGCCCGATGGCGGGGCCGTAATCGAGTTGATTGTGCCCGAGAGCGAAAGGGCTTCGAGGGTTTTGGAGGTTGAGCCATTGCCGAAGGTGAAATTGACCCAGATTGATCTTGAGTGGGTTCATGTTATCAGTGAAGGATGGGCGAGCCCATTGAAAGGGTTCATGCGAGAAGATGAGTATTTGCAGAGTTTGCATTTCAATTGCTTGAAAATTAAAGATGGGTCTTTTGTTAACATGTCGCTTCCCATTGTTCTTGCCATTGGAGATGATGTTAAGGAACAAATTGGGTCTTCGTCCAATGTGGGATTGGTTGGTCCCAATGGAGATTTGGTTGGTGTTCTTCACAGCATTGAAATATTCAAGCATAACAAGGAAGAGAGAATAGCTAGAACTTGGGGTACAACTGCACCAGGGCTGCCATATGTTGATGAGGTCATTACAAATGCTGGAAACTGGCTTATTGGTGGAGATCTTGAAGTAATAAACCCCATCAAATACAACGATGGACTTGATCATTATAGGCTGTCTCCTAAACAACTTCGCCAAGAGTTCGATAGGCGTCAGGCCGATGCTGTCTTCGCCTTTCAATTGAGGAACCCTGTGCACAACGGGCATGCTTTGTTAATGAACGATACACGAAAGCGACTTCTCGACATGGGTTACAAGAATCCAATTTTATTGCTTCACCCTTTGGGAGGTTACACGAAAGCAGATGATGTGCCATTGGATGTTCGAATGGAGCAACACAGCAAGGTTTTAGAAGATGGAGTCCTTGACCCTGAAACGACCATTGTCTCCATATTCCCATCGCCGATGCATTACGCAGGTCCAACCGAAGTACAATGGCATGCTAAGGCAAGGATCAACGCAGGGGCAAATTTCTACATTGTTGGTCGAGACCCTGCTGGAATGGGGCACCCAACGGAGAAGAGAGATTTATATGATCCAGACCATGGCAAAAAGGTCTTAAGTATGGCCCCTGGCCTTGAGAAACTAAACATATTGCCCTTCAAGGTTGCAGCATACGATACCGAAGCGAAGAAGATGGCGTTCTTCGATCCTTCGCGTGCGAAAGATTTCCTCTTCATCTCCGGAACAAAGATGCGAACTTATGCAAGGACGGGCGAGAACCCTCCCGATGGTTTCATGTGCCCTGGCGGATGGAAGGTGTTGGTCGACTACTACAAGAGCTTGCAGGCCGAAGATGCGTCGCAGCAACCTGCATTATCAGTTTAG 1425 47.09 MSLVFKLQIAISPQITTLNKKTPVTSYYTKIKSKPIYVSEPLRIKPAMQSHSPPRSSIKSSLIEPDGGAVIELIVPESERASRVLEVEPLPKVKLTQIDLEWVHVISEGWASPLKGFMREDEYLQSLHFNCLKIKDGSFVNMSLPIVLAIGDDVKEQIGSSSNVGLVGPNGDLVGVLHSIEIFKHNKEERIARTWGTTAPGLPYVDEVITNAGNWLIGGDLEVINPIKYNDGLDHYRLSPKQLRQEFDRRQADAVFAFQLRNPVHNGHALLMNDTRKRLLDMGYKNPILLLHPLGGYTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFKVAAYDTEAKKMAFFDPSRAKDFLFISGTKMRTYARTGENPPDGFMCPGGWKVLVDYYKSLQAEDASQQPALSV 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18760157 18763823 - Sed0024151.1 Sed01g2503 701807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2503 474 Gene3D Sulfate adenylyltransferase 61 229 - -
Sed01g2503 474 FunFam bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 230 463 - -
Sed01g2503 474 FunFam ATP sulfurylase 2 61 229 - -
Sed01g2503 474 NCBIfam sulfate adenylyltransferase 65 456 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Sed01g2503 474 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 58 450 - GO:0000103(PANTHER)|GO:0004020(PANTHER)
Sed01g2503 474 SUPERFAMILY PUA domain-like 65 229 IPR015947 -
Sed01g2503 474 CDD ATPS 90 457 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Sed01g2503 474 Pfam ATP-sulfurylase 235 456 IPR024951 GO:0004781(InterPro)
Sed01g2503 474 Pfam PUA-like domain 63 225 IPR025980 -
Sed01g2503 474 SUPERFAMILY Nucleotidylyl transferase 235 458 - -
Sed01g2503 474 Gene3D HUPs 230 463 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2503 K13811 - - csv:101217416 857.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2503 Sed-Chr1:18760157 Sed04g1939 Sed-Chr4:34071945 1.70E-190 dispersed
Sed01g2503 Sed-Chr1:18760157 Sed02g1352 Sed-Chr2:49832029 5.70E-191 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1086 Blo01g01591 . Bda01g00494 . Bpe02g00356 . . Bma01g02362 . . Cma01g01965 . Car01g01535 . . . . . . . . . . . . . . . . . . . . Cone17ag1393 Cone20ag0087 Lsi04g01731 Csa03g04268 Chy04g00427 . . . . . . . . . Sed01g2503 Cmo01g02023 . . . . . . Cpe02g00078 Bhi09g02099 Tan01g5005 Cmetu04g0401 . Hepe01g1625 Mch11g0129 . Cla05g01885 Cam05g2018 Cec05g2029 Cco05g2086 Clacu05g2009 Cmu05g1890 Cre05g2013 . . . Cme04g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93