Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2519 ATGGCTCGAGGGAAGATCCAGATCAAGCGAATCGAGAACCCGACGAACCGGCAAGTGACGTACTCGAAGCGTCGCAATGGGCTGTTCAAGAAGGCCAACGAGCTCACCGTTCTTTGCGATGCTAAAGTTTCTGTTATCATGTTTTCTAGCACCGGGAAGCTTCATGAGTTCATCAGCCCGGCCACTTCGACCAAGGAGTTGTTTGATCTGTACCAGAAGACTTTGGGGGTTGATTTGTGGAACTCTCACTATGAGAAAATGCAAGAGAATCTCAAGAAGCTCAAAGATGTTAATCGGAATTTACGCAGGCAGATTCGACAGAGGATGGGGGAATGTATGAATGATCTGAGCTTTGAGGAACTGCGTTGTCTCGAGGAAGATATGGATAATGCCTCCAGGATCATCCGTGAACGCAAGTATCGAGTGATATCGAACCAGATTGAAACGCACAAGAAAAAGTATAAGAGTGTAGGAGAAATACACAAGAGCCTTCTCCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGATTGGTAGACAATGGAGGGGATTACGAATCAATGATGGGATTCTCAGGTGCTGGCCCAGCTCGCATTTTCGCCCTTAGCCTGCAACCAAACATCCCTAATAATAATAATCATATTCACCATGCCCCTACTTCAGATCTCACTACTTATCCACTCCTTGAGTAA 699 45.64 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSVIMFSSTGKLHEFISPATSTKELFDLYQKTLGVDLWNSHYEKMQENLKKLKDVNRNLRRQIRQRMGECMNDLSFEELRCLEEDMDNASRIIRERKYRVISNQIETHKKKYKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGDYESMMGFSGAGPARIFALSLQPNIPNNNNHIHHAPTSDLTTYPLLE 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18838408 18842434 - Sed0023354.1 Sed01g2519 701823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2519 232 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 Coils Coil 77 111 - -
Sed01g2519 232 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed01g2519 232 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g2519 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g2519 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2519 232 FunFam MADS-box transcription factor 16 13 97 - -
Sed01g2519 232 Pfam K-box region 81 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2519 Sed-Chr1:18838408 Sed13g1604 Sed-Chr13:21213085 5.80E-96 dispersed
Sed05g2399 Sed-Chr5:36388085 Sed01g2519 Sed-Chr1:18838408 7.00E-32 transposed
Sed01g2519 Sed-Chr1:18838408 Sed13g1603 Sed-Chr13:21213085 4.70E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37301 PF01486 K-box 2.50E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2519 K09264 - csv:101218008 401.364