Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2523 | ATGGACCGACAAAAGAGATCGAACAACAACAACGTTGCTCAAGCCAGCTCTCGCAAGGGCTGCATGCGAGGCAAGGGCGGTCCGGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGCACTTGGGGCAAATGGGTCGCTGAGATTCGTGAGCCGAATCGCGGTGCTCGGCTATGGCTTGGCACTTTCGAAACCGCCCATGAAGCTGCCGTGGCTTACGACGCTGCCGCTCGTAAGCTCTACGGCTCCGACGCCAAGCTTAACCTCCCTCAAATTGCTTCCGAGCCTCAACGGTCCTTGCCGAGTGATGTGATGTCGTCGTCGACATCGTCGCTGCCCGTGGTCGGACAGTGGGGAAGCGAGGATGTGAATTTTGATGAGTCCATATGGAGGGAGGCTGTTATGTCTTTGGATTTCCCTATTGTTGAAGATGATCAAGGGTTTTATTGTGATGGGGTCAACAATTGGGATACTTTGCAGTGGTGCATGTGA | 495 | 54.75 | MDRQKRSNNNNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFETAHEAAVAYDAAARKLYGSDAKLNLPQIASEPQRSLPSDVMSSSTSSLPVVGQWGSEDVNFDESIWREAVMSLDFPIVEDDQGFYCDGVNNWDTLQWCM | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18865626 | 18866120 | - | Sed0016065.1 | Sed01g2523 | 701827 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2523 | 164 | CDD | AP2 | 33 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2523 | 164 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 111 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Sed01g2523 | 164 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2523 | 164 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2523 | 164 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2523 | 164 | FunFam | Ethylene-responsive transcription factor 2 | 33 | 92 | - | - | |
Sed01g2523 | 164 | SUPERFAMILY | DNA-binding domain | 34 | 91 | IPR016177 | GO:0003677(InterPro) | |
Sed01g2523 | 164 | Gene3D | AP2/ERF domain | 34 | 92 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2523 | 164 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed01g2523 | 164 | Pfam | AP2 domain | 35 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2523 | 164 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2523 | Sed-Chr1:18865626 | Sed11g2140 | Sed-Chr11:35265437 | 3.90E-30 | dispersed | |
Sed01g2523 | Sed-Chr1:18865626 | Sed11g1066 | Sed-Chr11:26050024 | 8.40E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37305 | PF00847 | AP2 | 1.20E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2523 | - | - | - | 0.0 |