Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2523 ATGGACCGACAAAAGAGATCGAACAACAACAACGTTGCTCAAGCCAGCTCTCGCAAGGGCTGCATGCGAGGCAAGGGCGGTCCGGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGCACTTGGGGCAAATGGGTCGCTGAGATTCGTGAGCCGAATCGCGGTGCTCGGCTATGGCTTGGCACTTTCGAAACCGCCCATGAAGCTGCCGTGGCTTACGACGCTGCCGCTCGTAAGCTCTACGGCTCCGACGCCAAGCTTAACCTCCCTCAAATTGCTTCCGAGCCTCAACGGTCCTTGCCGAGTGATGTGATGTCGTCGTCGACATCGTCGCTGCCCGTGGTCGGACAGTGGGGAAGCGAGGATGTGAATTTTGATGAGTCCATATGGAGGGAGGCTGTTATGTCTTTGGATTTCCCTATTGTTGAAGATGATCAAGGGTTTTATTGTGATGGGGTCAACAATTGGGATACTTTGCAGTGGTGCATGTGA 495 54.75 MDRQKRSNNNNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFETAHEAAVAYDAAARKLYGSDAKLNLPQIASEPQRSLPSDVMSSSTSSLPVVGQWGSEDVNFDESIWREAVMSLDFPIVEDDQGFYCDGVNNWDTLQWCM 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18865626 18866120 - Sed0016065.1 Sed01g2523 701827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2523 164 CDD AP2 33 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2523 164 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 111 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Sed01g2523 164 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2523 164 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2523 164 SMART rav1_2 34 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2523 164 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Sed01g2523 164 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677(InterPro)
Sed01g2523 164 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2523 164 MobiDBLite consensus disorder prediction 1 28 - -
Sed01g2523 164 Pfam AP2 domain 35 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2523 164 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2523 Sed-Chr1:18865626 Sed11g2140 Sed-Chr11:35265437 3.90E-30 dispersed
Sed01g2523 Sed-Chr1:18865626 Sed11g1066 Sed-Chr11:26050024 8.40E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37305 PF00847 AP2 1.20E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2523 - - - 0.0