Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2541 ATGCGTTTGAGAGGCGTAATTCGTGATCAAAGTATAATACGAGAAGGCAGTGGGAGTTTATCTAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTAGGGAAATCGCACATCGTCCCTGAGCAATCTCCTTCATCTGTGACACGTCCTATTGAACAGAGCAATTGGGCGAATTTGCCTCCAGAGCTTCTTTTGGACATAATTCGTCGAGTGGAGGCGAGCGAAACCACTTGGCCTTCTCGCCGGGACGTTGTCGCCTGTGCTTTAGTTTGCAGGTCATGGCGGATGATCACACAGGATGTTGTGATGACTCCCGAACAGTGTGGCTTGATCACCTTCCCAATTTCTTTGAAACAGCCGGGACCAAGAGATGCCCCAATCCAGTGCTTCATTAGAAGAGAAAGGGAAACTTCAACGTTTCAACTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATGTAAGTAAACTGTTGTTAACTGCAAAAAGATTTCGACGAGCAATGAGTACCGAATTCATTGTATCATTTGTTCCAGACGACTACTCTCGAGCAAGCAACAATTACATTGGAAAGATAAAGTCAAATTTTTTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCTAAGAGTACAAACCAGTAAACCAAAACGAAGAATCAATTTGAAACAGGTTTCTCCGAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAGCCTACGAGCTCAACATCCTCCGTACCAGAGGGCCGAGAAGAATGAGGTGCATCATGCCTTCGATACCTTTTGCAGCAGTAGAGGAAGGTGGCACTGCCCCAACTCCAACAAAGTTTATAGACTGCATCAATGACCACCATACATCTACATCAACTAGCAAAGGAAAGAAGTTGATAGCCAAGTCCCCCGAGCACCAGGAATCAATGGCTCCTTTGGAGTTGAAGAACAAAGCCCCAAGATGGCACGAGCAGCTGCAATGTTGGTGCTTGAATTTCAAAGGGCGCGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTCGCTGCATTGGAGACGAATCAAAATGTGTCTGAAGCCGAGCAAGATAAAGCAATTCTGCAGTTTGGTAAGATCGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTTCAAGCATTTGCAATTTGCCTTAGTAGCTTTGACACCAAGCCAGCTTGTGAATGA 1221 46.11 MRLRGVIRDQSIIREGSGSLSRKVREGVQMRHLGKSHIVPEQSPSSVTRPIEQSNWANLPPELLLDIIRRVEASETTWPSRRDVVACALVCRSWRMITQDVVMTPEQCGLITFPISLKQPGPRDAPIQCFIRRERETSTFQLYLGLSPALSGNVSKLLLTAKRFRRAMSTEFIVSFVPDDYSRASNNYIGKIKSNFLGTKFSIYDSQPPHDLRVQTSKPKRRINLKQVSPSKTPTNYKVAAVAYELNILRTRGPRRMRCIMPSIPFAAVEEGGTAPTPTKFIDCINDHHTSTSTSKGKKLIAKSPEHQESMAPLELKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAALETNQNVSEAEQDKAILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19082732 19086447 + Sed0000518.1 Sed01g2541 701845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2541 406 ProSitePatterns Tub family signature 2. 391 406 IPR018066 -
Sed01g2541 406 SUPERFAMILY Tubby C-terminal domain-like 105 406 IPR025659 -
Sed01g2541 406 Gene3D - 50 103 - -
Sed01g2541 406 Gene3D Tubby Protein; Chain A 114 406 IPR025659 -
Sed01g2541 406 PANTHER TUBBY-RELATED 47 405 - -
Sed01g2541 406 SUPERFAMILY F-box domain 48 100 IPR036047 GO:0005515(InterPro)
Sed01g2541 406 ProSitePatterns Tub family signature 1. 334 347 IPR018066 -
Sed01g2541 406 Pfam Tub family 117 401 IPR000007 -
Sed01g2541 406 Pfam F-box-like 56 100 IPR001810 GO:0005515(InterPro)
Sed01g2541 406 CDD F-box_AtTLP-like 56 100 - -
Sed01g2541 406 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Sed01g2541 406 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Sed01g2541 406 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Sed01g2541 406 PRINTS Tubby superfamily signature 334 350 IPR000007 -
Sed01g2541 406 PRINTS Tubby superfamily signature 316 333 IPR000007 -
Sed01g2541 406 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Sed01g2541 406 PRINTS Tubby superfamily signature 363 382 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2541 Sed-Chr1:19082732 Sed13g0889 Sed-Chr13:6591280 2.10E-141 dispersed
Sed01g2541 Sed-Chr1:19082732 Sed13g1637 Sed-Chr13:21475692 1.10E-195 wgd
Sed01g2541 Sed-Chr1:19082732 Sed14g1125 Sed-Chr14:20719802 1.40E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37306 PF01167 Tub 4.80E-103 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2541 K19600 - csv:101222500 675.241