Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2541 | ATGCGTTTGAGAGGCGTAATTCGTGATCAAAGTATAATACGAGAAGGCAGTGGGAGTTTATCTAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTAGGGAAATCGCACATCGTCCCTGAGCAATCTCCTTCATCTGTGACACGTCCTATTGAACAGAGCAATTGGGCGAATTTGCCTCCAGAGCTTCTTTTGGACATAATTCGTCGAGTGGAGGCGAGCGAAACCACTTGGCCTTCTCGCCGGGACGTTGTCGCCTGTGCTTTAGTTTGCAGGTCATGGCGGATGATCACACAGGATGTTGTGATGACTCCCGAACAGTGTGGCTTGATCACCTTCCCAATTTCTTTGAAACAGCCGGGACCAAGAGATGCCCCAATCCAGTGCTTCATTAGAAGAGAAAGGGAAACTTCAACGTTTCAACTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATGTAAGTAAACTGTTGTTAACTGCAAAAAGATTTCGACGAGCAATGAGTACCGAATTCATTGTATCATTTGTTCCAGACGACTACTCTCGAGCAAGCAACAATTACATTGGAAAGATAAAGTCAAATTTTTTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCTAAGAGTACAAACCAGTAAACCAAAACGAAGAATCAATTTGAAACAGGTTTCTCCGAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAGCCTACGAGCTCAACATCCTCCGTACCAGAGGGCCGAGAAGAATGAGGTGCATCATGCCTTCGATACCTTTTGCAGCAGTAGAGGAAGGTGGCACTGCCCCAACTCCAACAAAGTTTATAGACTGCATCAATGACCACCATACATCTACATCAACTAGCAAAGGAAAGAAGTTGATAGCCAAGTCCCCCGAGCACCAGGAATCAATGGCTCCTTTGGAGTTGAAGAACAAAGCCCCAAGATGGCACGAGCAGCTGCAATGTTGGTGCTTGAATTTCAAAGGGCGCGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTCGCTGCATTGGAGACGAATCAAAATGTGTCTGAAGCCGAGCAAGATAAAGCAATTCTGCAGTTTGGTAAGATCGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTTCAAGCATTTGCAATTTGCCTTAGTAGCTTTGACACCAAGCCAGCTTGTGAATGA | 1221 | 46.11 | MRLRGVIRDQSIIREGSGSLSRKVREGVQMRHLGKSHIVPEQSPSSVTRPIEQSNWANLPPELLLDIIRRVEASETTWPSRRDVVACALVCRSWRMITQDVVMTPEQCGLITFPISLKQPGPRDAPIQCFIRRERETSTFQLYLGLSPALSGNVSKLLLTAKRFRRAMSTEFIVSFVPDDYSRASNNYIGKIKSNFLGTKFSIYDSQPPHDLRVQTSKPKRRINLKQVSPSKTPTNYKVAAVAYELNILRTRGPRRMRCIMPSIPFAAVEEGGTAPTPTKFIDCINDHHTSTSTSKGKKLIAKSPEHQESMAPLELKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAALETNQNVSEAEQDKAILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19082732 | 19086447 | + | Sed0000518.1 | Sed01g2541 | 701845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2541 | 406 | ProSitePatterns | Tub family signature 2. | 391 | 406 | IPR018066 | - | |
Sed01g2541 | 406 | SUPERFAMILY | Tubby C-terminal domain-like | 105 | 406 | IPR025659 | - | |
Sed01g2541 | 406 | Gene3D | - | 50 | 103 | - | - | |
Sed01g2541 | 406 | Gene3D | Tubby Protein; Chain A | 114 | 406 | IPR025659 | - | |
Sed01g2541 | 406 | PANTHER | TUBBY-RELATED | 47 | 405 | - | - | |
Sed01g2541 | 406 | SUPERFAMILY | F-box domain | 48 | 100 | IPR036047 | GO:0005515(InterPro) | |
Sed01g2541 | 406 | ProSitePatterns | Tub family signature 1. | 334 | 347 | IPR018066 | - | |
Sed01g2541 | 406 | Pfam | Tub family | 117 | 401 | IPR000007 | - | |
Sed01g2541 | 406 | Pfam | F-box-like | 56 | 100 | IPR001810 | GO:0005515(InterPro) | |
Sed01g2541 | 406 | CDD | F-box_AtTLP-like | 56 | 100 | - | - | |
Sed01g2541 | 406 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Sed01g2541 | 406 | PRINTS | Tubby superfamily signature | 384 | 406 | IPR000007 | - | |
Sed01g2541 | 406 | PRINTS | Tubby superfamily signature | 188 | 212 | IPR000007 | - | |
Sed01g2541 | 406 | PRINTS | Tubby superfamily signature | 334 | 350 | IPR000007 | - | |
Sed01g2541 | 406 | PRINTS | Tubby superfamily signature | 316 | 333 | IPR000007 | - | |
Sed01g2541 | 406 | PRINTS | Tubby superfamily signature | 172 | 188 | IPR000007 | - | |
Sed01g2541 | 406 | PRINTS | Tubby superfamily signature | 363 | 382 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2541 | Sed-Chr1:19082732 | Sed13g0889 | Sed-Chr13:6591280 | 2.10E-141 | dispersed | |
Sed01g2541 | Sed-Chr1:19082732 | Sed13g1637 | Sed-Chr13:21475692 | 1.10E-195 | wgd | |
Sed01g2541 | Sed-Chr1:19082732 | Sed14g1125 | Sed-Chr14:20719802 | 1.40E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37306 | PF01167 | Tub | 4.80E-103 | CL0395 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2541 | K19600 | - | csv:101222500 | 675.241 |