Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2548 ATGGCGCTTAGTTTTTCTTATTCTTCTAACTGTTTGTTGGTGCAGGAGGATGACCAAGGTTCCTCCACAATGGCGGTGAGGATTCCGGCTCGTGGGATTAGAGATCAATATTCATTTGATTTTTGGGATGACGGAGCTTATTCCGACGTCAAACGGATTCTGATTCATCATGATAGAGATGGCATCTATTCTCTTCGAATTCAGTATATTGATGAAAATGGTAAGGATCATTGGGGTGACCGGCATTGCAAGAGCCAAGAATTTTCTCATGAGTTCTCACACGACCTTATACTGAATCAGGTTGAATTAGATTATCGGAGCGAGTATCTCACCTCAATTCATGGCTACTACACCGATACAAACTTAACATCGATGACTTTCAAGAGCAATAGAACAACTTGGGGCCCGTATGGTAAGGAAGAAGAGGGAACCAGATTTTCATTCCCTCTTTTGGGGGCCAAGATTGTTGGCTTCCATGGCTTCAGTAAATGGCCCTGGTTGAATGGAATTGGAGTATACGTGCAACCAATTTCAAAAAGCAAGCGTTCATTGAAGCCTCAAGTACTGAAGCCCCCTCAACCACAACATTTTAGTTTGGGGCTATATGGACGTGAAGATGGGGAATCTTGGAGCGAAACTTCCCGTGCAATTAAGCAATTCGTAATTTATTATAATGATGAGTGGATCATTTCCATACAAATGGAATATGTGGATGAGAATGGAAAGTCCGTGTGGTCCGAGAAGCATGGTGGAGATGGGGGTACTCGGAAGGAGGTTGTTCTGGATCCGGATGAATATCTTGTTACAATTGAGGGGTCCTATGACTACTCACTTGACTCAAAATCGCCTACTGACAAGGTTCAATCGCTGACTGTGATAACCAACAAAAAGACTCATGAGCCAGTTAACAAAAAAATCGGAACAAAGTTCAAGTTCCCAACCGAGGAGCGGTTGAAGGTGGTTGGCATCCATGGCACATCTGATCATTCATATCTCAATTCCATCGGACTCTATGCAGTCTTGATTTAA 1029 43.05 MALSFSYSSNCLLVQEDDQGSSTMAVRIPARGIRDQYSFDFWDDGAYSDVKRILIHHDRDGIYSLRIQYIDENGKDHWGDRHCKSQEFSHEFSHDLILNQVELDYRSEYLTSIHGYYTDTNLTSMTFKSNRTTWGPYGKEEEGTRFSFPLLGAKIVGFHGFSKWPWLNGIGVYVQPISKSKRSLKPQVLKPPQPQHFSLGLYGREDGESWSETSRAIKQFVIYYNDEWIISIQMEYVDENGKSVWSEKHGGDGGTRKEVVLDPDEYLVTIEGSYDYSLDSKSPTDKVQSLTVITNKKTHEPVNKKIGTKFKFPTEERLKVVGIHGTSDHSYLNSIGLYAVLI 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19312693 19314738 - Sed0013345.2 Sed01g2548 701852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2548 342 CDD Jacalin 207 338 IPR033734 GO:0030246(InterPro)
Sed01g2548 342 SMART Jacalin_2 207 341 IPR001229 -
Sed01g2548 342 SMART Jacalin_2 39 176 IPR001229 -
Sed01g2548 342 Gene3D - 188 339 IPR036404 -
Sed01g2548 342 CDD Jacalin 40 175 IPR033734 GO:0030246(InterPro)
Sed01g2548 342 SUPERFAMILY Mannose-binding lectins 40 176 IPR036404 -
Sed01g2548 342 SUPERFAMILY Mannose-binding lectins 195 339 IPR036404 -
Sed01g2548 342 ProSiteProfiles Jacalin-type lectin domain profile. 196 341 IPR001229 -
Sed01g2548 342 ProSiteProfiles Jacalin-type lectin domain profile. 25 176 IPR001229 -
Sed01g2548 342 Gene3D - 31 179 IPR036404 -
Sed01g2548 342 Pfam Jacalin-like lectin domain 40 173 IPR001229 -
Sed01g2548 342 Pfam Jacalin-like lectin domain 200 338 IPR001229 -
Sed01g2548 342 PANTHER JACALIN-RELATED LECTIN 3 40 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2548 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2548 Sed-Chr1:19312693 Sed13g1640 Sed-Chr13:21490931 4.90E-51 dispersed
Sed01g2547 Sed-Chr1:19312693 Sed01g2548 Sed-Chr1:19312693 2.90E-197 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001431 0 9 1 0 0 2 0 2 3 3 0 3 1 3 3 0 3 0 0 3 2 2 2 3 4 5 3 6 9 0 72