Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2598 ATGTATTTTCTTCTTCTTTCTCTTCTTCTTCTTCTCACAATCCTCCTCAAATTTCTCTACTCCGTTTTCTGGCTTCCATGGAGGATTCAAATCCACTTCCGAAGGCAGGGCATAGCCGGCCCTCCCTACCGTCCGATCGTCGGCAACTCCGCCGACATCCGCCGTCTCTTCGCGGCGGCGCAATCGAACCCGATTCCCTTCCACCACGACGTACTCAGCCGCGCTCTCCCCTTTTACTCCCGGTGGTCCGGCGAGTACGGCGACACGTTTCTCTACTGGTTCGGGTCGAACCCGAGACTCGCCCTATCCGACCCGGATCTGATCAAGGAAGTGCTTGTGAACACGGGCGGGTCGTTTTCACGGATCCAGTTCAACCCGCTGTCGAAGGGGCTTTTCGGAAAGGGGTTGATCGGACTTGAGGGCGAAAAGTGGGTCGCGCACAGGAGAATTGCTAATCAGGCTTTCACCATCGAGCGTGTTAAGGGTTGGGTACCTGAAATTGTTGATAGTGTATCGAATGTGTTGGAGAGATGGGAAGAGATGAAGGGTGGGATGGAGGAATTTGAATTGGAAGTTCACAAAGAATGTCGTCAGCTTTCGGCAGACGTGATCTCAAGAACTGCATTTGGGAGTAATTTTGAAGCTGGAAAACGTGTCTTCAATTTGCTTGAACAACAAACTCATCTTTTCTCCCTGGCTGTCAGAAGTGTTTATATTCCTGGCTTCAGGTTTTTGCCAACCAAGAAGAACAAAGAAAGGTGGAGCCTAGAGAAAGAAACTTGTGAATTGATAAAAGTGTTGATTGAGACAAATAGCAAAGGAAAGGAAAAAAACTCGACGGATCTACTCAGCTTGTTAATGTCATCTTACAAGAACCAGAATGGGGAAGAAGAAAGACTTGGAGTTGAGGAAATCATCGAAGAATGTAAGACATTCTATTTTGCAGGAATGGAAACAACGGCTCATCTCTTAACTTGGGCTCTTTTGCTGCTGGCAAAGCATCAAGAATGGCAAGACAAGGCCAGGGAAGAAGTTCTCAATGTCTGTGGGCACAAAACACCTCCGGCAGCGGAGAATTTGAGTGAACTTAAACTTGTAGGTATGATAATCAATGAAACACTTCGACTCTATCCTCCAGCAGTGATGTTGACTAGGCGGGCATCGAAACGACTGACACTAGGAAACTTAGACGTTCCTGCTGGCACAGAGCTCTTCTTGGCGCTGGCTGCTGTCCACCACAACAAAGATATTTGGGGAGATGATGCAAACAGCTTCAACCCTTCGAGATTTGGTGAGCCTCGTAAACATTTAGCTTCGTTCCTGCCATTTTCGTTGGGTCCGAGAATTTGTGTAGGACAAAACTTGGCGTTGATTGAGGTCAAAGTTGCACTGGCTATGATAATTCAACAATTCTCTCTTGCTGTTTCTCCAACCTACACTCATGCCCCTATGCTGTTTATAACCTTACAGCCTCAGTTTGGTGCTCAGCTCATCGTTAGGAGCTTATGA 1509 47.38 MYFLLLSLLLLLTILLKFLYSVFWLPWRIQIHFRRQGIAGPPYRPIVGNSADIRRLFAAAQSNPIPFHHDVLSRALPFYSRWSGEYGDTFLYWFGSNPRLALSDPDLIKEVLVNTGGSFSRIQFNPLSKGLFGKGLIGLEGEKWVAHRRIANQAFTIERVKGWVPEIVDSVSNVLERWEEMKGGMEEFELEVHKECRQLSADVISRTAFGSNFEAGKRVFNLLEQQTHLFSLAVRSVYIPGFRFLPTKKNKERWSLEKETCELIKVLIETNSKGKEKNSTDLLSLLMSSYKNQNGEEERLGVEEIIEECKTFYFAGMETTAHLLTWALLLLAKHQEWQDKAREEVLNVCGHKTPPAAENLSELKLVGMIINETLRLYPPAVMLTRRASKRLTLGNLDVPAGTELFLALAAVHHNKDIWGDDANSFNPSRFGEPRKHLASFLPFSLGPRICVGQNLALIEVKVALAMIIQQFSLAVSPTYTHAPMLFITLQPQFGAQLIVRSL 502
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 19860474 19866678 + Sed0006267.1 Sed01g2598 701902
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2598 502 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 Gene3D Cytochrome P450 22 501 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 Pfam Cytochrome P450 80 478 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS E-class P450 group I signature 199 217 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS E-class P450 group I signature 107 128 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2598 502 PANTHER CYTOCHROME P450 FAMILY MEMBER 13 494 IPR050665 GO:0004497(PANTHER)
Sed01g2598 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed01g2598 502 SUPERFAMILY Cytochrome P450 34 500 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2598 Sed-Chr1:19860474 Sed12g1720 Sed-Chr12:28384951 2.30E-118 dispersed
Sed01g2598 Sed-Chr1:19860474 Sed01g2599 Sed-Chr1:19869139 8.60E-129 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2598 - - - 0.0