Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g2598 | ATGTATTTTCTTCTTCTTTCTCTTCTTCTTCTTCTCACAATCCTCCTCAAATTTCTCTACTCCGTTTTCTGGCTTCCATGGAGGATTCAAATCCACTTCCGAAGGCAGGGCATAGCCGGCCCTCCCTACCGTCCGATCGTCGGCAACTCCGCCGACATCCGCCGTCTCTTCGCGGCGGCGCAATCGAACCCGATTCCCTTCCACCACGACGTACTCAGCCGCGCTCTCCCCTTTTACTCCCGGTGGTCCGGCGAGTACGGCGACACGTTTCTCTACTGGTTCGGGTCGAACCCGAGACTCGCCCTATCCGACCCGGATCTGATCAAGGAAGTGCTTGTGAACACGGGCGGGTCGTTTTCACGGATCCAGTTCAACCCGCTGTCGAAGGGGCTTTTCGGAAAGGGGTTGATCGGACTTGAGGGCGAAAAGTGGGTCGCGCACAGGAGAATTGCTAATCAGGCTTTCACCATCGAGCGTGTTAAGGGTTGGGTACCTGAAATTGTTGATAGTGTATCGAATGTGTTGGAGAGATGGGAAGAGATGAAGGGTGGGATGGAGGAATTTGAATTGGAAGTTCACAAAGAATGTCGTCAGCTTTCGGCAGACGTGATCTCAAGAACTGCATTTGGGAGTAATTTTGAAGCTGGAAAACGTGTCTTCAATTTGCTTGAACAACAAACTCATCTTTTCTCCCTGGCTGTCAGAAGTGTTTATATTCCTGGCTTCAGGTTTTTGCCAACCAAGAAGAACAAAGAAAGGTGGAGCCTAGAGAAAGAAACTTGTGAATTGATAAAAGTGTTGATTGAGACAAATAGCAAAGGAAAGGAAAAAAACTCGACGGATCTACTCAGCTTGTTAATGTCATCTTACAAGAACCAGAATGGGGAAGAAGAAAGACTTGGAGTTGAGGAAATCATCGAAGAATGTAAGACATTCTATTTTGCAGGAATGGAAACAACGGCTCATCTCTTAACTTGGGCTCTTTTGCTGCTGGCAAAGCATCAAGAATGGCAAGACAAGGCCAGGGAAGAAGTTCTCAATGTCTGTGGGCACAAAACACCTCCGGCAGCGGAGAATTTGAGTGAACTTAAACTTGTAGGTATGATAATCAATGAAACACTTCGACTCTATCCTCCAGCAGTGATGTTGACTAGGCGGGCATCGAAACGACTGACACTAGGAAACTTAGACGTTCCTGCTGGCACAGAGCTCTTCTTGGCGCTGGCTGCTGTCCACCACAACAAAGATATTTGGGGAGATGATGCAAACAGCTTCAACCCTTCGAGATTTGGTGAGCCTCGTAAACATTTAGCTTCGTTCCTGCCATTTTCGTTGGGTCCGAGAATTTGTGTAGGACAAAACTTGGCGTTGATTGAGGTCAAAGTTGCACTGGCTATGATAATTCAACAATTCTCTCTTGCTGTTTCTCCAACCTACACTCATGCCCCTATGCTGTTTATAACCTTACAGCCTCAGTTTGGTGCTCAGCTCATCGTTAGGAGCTTATGA | 1509 | 47.38 | MYFLLLSLLLLLTILLKFLYSVFWLPWRIQIHFRRQGIAGPPYRPIVGNSADIRRLFAAAQSNPIPFHHDVLSRALPFYSRWSGEYGDTFLYWFGSNPRLALSDPDLIKEVLVNTGGSFSRIQFNPLSKGLFGKGLIGLEGEKWVAHRRIANQAFTIERVKGWVPEIVDSVSNVLERWEEMKGGMEEFELEVHKECRQLSADVISRTAFGSNFEAGKRVFNLLEQQTHLFSLAVRSVYIPGFRFLPTKKNKERWSLEKETCELIKVLIETNSKGKEKNSTDLLSLLMSSYKNQNGEEERLGVEEIIEECKTFYFAGMETTAHLLTWALLLLAKHQEWQDKAREEVLNVCGHKTPPAAENLSELKLVGMIINETLRLYPPAVMLTRRASKRLTLGNLDVPAGTELFLALAAVHHNKDIWGDDANSFNPSRFGEPRKHLASFLPFSLGPRICVGQNLALIEVKVALAMIIQQFSLAVSPTYTHAPMLFITLQPQFGAQLIVRSL | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 19860474 | 19866678 | + | Sed0006267.1 | Sed01g2598 | 701902 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g2598 | 502 | PRINTS | P450 superfamily signature | 450 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | P450 superfamily signature | 441 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | P450 superfamily signature | 368 | 379 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | P450 superfamily signature | 315 | 332 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | Gene3D | Cytochrome P450 | 22 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | Pfam | Cytochrome P450 | 80 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | E-class P450 group I signature | 440 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | E-class P450 group I signature | 83 | 102 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | E-class P450 group I signature | 199 | 217 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | E-class P450 group I signature | 324 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | E-class P450 group I signature | 107 | 128 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | E-class P450 group I signature | 304 | 321 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PRINTS | E-class P450 group I signature | 450 | 473 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2598 | 502 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 13 | 494 | IPR050665 | GO:0004497(PANTHER) | |
| Sed01g2598 | 502 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 443 | 452 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g2598 | 502 | SUPERFAMILY | Cytochrome P450 | 34 | 500 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2598 | Sed-Chr1:19860474 | Sed12g1720 | Sed-Chr12:28384951 | 2.30E-118 | dispersed | |
| Sed01g2598 | Sed-Chr1:19860474 | Sed01g2599 | Sed-Chr1:19869139 | 8.60E-129 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g2598 | - | - | - | 0.0 |