Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g2615 | ATGAAATTATCTCTCATTTCCTCCTCCGACATCGTCGCCGGAATCTTCGCCGCCGTCATCTTTCTTTATGCCATCTCCAAGTTATATGGAAGATTCGCTGCCCATCGACGGAGGCCGCCACCGCAAGCCAGCGGCGCGTTGCCGTTGATCGGCCACCTCCACCTCCTAGCTGGGAAAGAGCCAGCCCACATAACCTTTGCAAAAATGGCTGACAATTTCGGGCCAATTTTCACCTTGAAATCAGGTGTGTTCACAAATTTAATTGTGAGCAATTGGGAAATAGCAAAAGAATGTCTTACTACAAACGACAAGATCTTTGCTTCTCGTCCAACGTCGGCAGCCTCAAAAATTTTGGGTTATGATTGCGCCATGATGGGGTTAAGCCCCTACGGTCCACATTGGCGCTACGTTCGCAAGCTCGCCACGCTCGAGCTCTTGACGAGTCACCGTCTCGAGCAGCTCCAACACATAAGAATCTTTGAGGTTAGAAGTTCGATTCGGAGACTATACGGCCTATGCGTCAACAATAGTAAAAACAATGGAAATGACAAGGTGTTGGTGGAGATGAAGGCTTGGTTTGGAGACATAACTCTCAACGTGATATTAAGGATGGTGGTCGGAAGGCGATTCTCGACCGCGGTGGACGGGGACGGTAACGAGGAGTATCGAAAGGCGTTAAGGGATTTCTTCGAATGGTTTGGGGTGTTTGTTCCCTCGGATTCGTTTCCGTGTTTGAAGTGGTTTGATATTGGAGGACATGAGAAGGCTATGAAAAAGACAGCAAAAGTTCTTGATGAAGTGTTTGATAAATGGCTTGAAGAGAACAGACAAAAGAGGAGTTTTGGTGAAGGGAAGATGGAGGAGGAGCATGACTTCATGAATGTGATGATTTCTAGTGTTAAAGATAATGGAGAGCTTTCTAACTATGATGCTGATACTGTCACCAAGGCTATATGTTTGACTCTTATATTAGCAGGATCCGACACAACAACAGTAACAATGATATGGGCTCTTTCTTTACTTCTCAACAATGAAGGCAAACTCAAGAAAGCTCAATTCGAACTCGATGAACAAGTCGGGCGACAAAGACAAGTGAAAGAGTCGGATATAAAAAACTTACCATATCTACAAGCCATAGTTAAAGAAACACTACGCTTGTATCCAGCAGCGCCAATCATGATTCCTCACGAATCAATGGAGGATTGCAAGGTTGCTGGCTACGACATCCCAAAAGGAACAAGGCTCATAGTAAATGTTCAAAAGCTTCAAAGAGATGAACAAATATGGGAAAATCCTTGCGAATTTCGACCCGAGAGATTTCTAACGAGTCACAAAGATTTTGATGTTAGAGGACAAAGCCCTCAATTCATACCATTTGGAAGTGGTAGAAGAATGTGCCCCGGTGTTTCATTTGCTCTCCAAGTTTTGCATTTGACACTTGCAAATTTGCTTCATGGATTTGAAATTAGTCGACCGTTTGACGAGGATCTTGATATGGAGGAGAGTGCTGGAATGACAAGTATTAGGAAGAATCTACTTGAGGTGGCTTTGAGTCCACGGCTTCTAGCTCAAGTTTATGAGTGA | 1584 | 44.38 | MKLSLISSSDIVAGIFAAVIFLYAISKLYGRFAAHRRRPPPQASGALPLIGHLHLLAGKEPAHITFAKMADNFGPIFTLKSGVFTNLIVSNWEIAKECLTTNDKIFASRPTSAASKILGYDCAMMGLSPYGPHWRYVRKLATLELLTSHRLEQLQHIRIFEVRSSIRRLYGLCVNNSKNNGNDKVLVEMKAWFGDITLNVILRMVVGRRFSTAVDGDGNEEYRKALRDFFEWFGVFVPSDSFPCLKWFDIGGHEKAMKKTAKVLDEVFDKWLEENRQKRSFGEGKMEEEHDFMNVMISSVKDNGELSNYDADTVTKAICLTLILAGSDTTTVTMIWALSLLLNNEGKLKKAQFELDEQVGRQRQVKESDIKNLPYLQAIVKETLRLYPAAPIMIPHESMEDCKVAGYDIPKGTRLIVNVQKLQRDEQIWENPCEFRPERFLTSHKDFDVRGQSPQFIPFGSGRRMCPGVSFALQVLHLTLANLLHGFEISRPFDEDLDMEESAGMTSIRKNLLEVALSPRLLAQVYE | 527 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 20032739 | 20036727 | - | Sed0017927.1 | Sed01g2615 | 701919 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 196 | 214 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 94 | 115 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 377 | 395 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 456 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 466 | 489 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | E-class P450 group I signature | 70 | 89 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 459 | 468 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g2615 | 527 | SUPERFAMILY | Cytochrome P450 | 45 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | CDD | CYP82 | 74 | 520 | - | - | |
| Sed01g2615 | 527 | Pfam | Cytochrome P450 | 42 | 506 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | P450 superfamily signature | 457 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PRINTS | P450 superfamily signature | 466 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | Gene3D | Cytochrome P450 | 31 | 521 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2615 | 527 | PANTHER | CYTOCHROME P450 82C3-RELATED | 16 | 521 | IPR050651 | - | |
| Sed01g2615 | 527 | FunFam | Cytochrome P450 82C4 | 31 | 518 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2615 | Sed-Chr1:20032739 | Sed13g1694 | Sed-Chr13:21993729 | 3.80E-212 | dispersed | |
| Sed01g2614 | Sed-Chr1:20019544 | Sed01g2615 | Sed-Chr1:20032739 | 4.80E-164 | tandem | |
| Sed01g2615 | Sed-Chr1:20032739 | Sed01g2616 | Sed-Chr1:20038883 | 2.50E-110 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g2615 | - | - | - | 0.0 |