Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2622 ATGTTTCTCAGCTCCAACGCCCTTGTCATGAACACGCCGGACCTCTCCTTGCAGATCAGCCTCCCGTCCCCCGACAAGCCGAAACCGCGAAGCTCCGATTCGTCTTGTTGCAGTGGGAGAAGTGATTTGAGCAGCACCCATGAGAATGGTTTGTTCCGGTTAGGGTTTGAAATGATGGGGGATCGTGGGGGTTACCGAGGTTTTAACGTTGCCCATGGCCGTCGTGACTTCAAGCGGAGCGGCGGTGGTGTCGGAGGGAGACGAACCGTTCGAGCTCCTAGAATGAGATGGACTACCACTCTTCATGCTCATTTTGTACATGCTGTTGAGCTTCTTGGCGGTCATGAAAGAGCTACACCAAAATCTGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACAGGACAGTGAAGAATACTGTCAAGGGAACAGATGATTGTGGAAGGCCTGAGCTTGAAGGAGATAAGATATTTTCTTCTTCTTCTTCATCTGTTCAAAATTGTAGTTTTCAGTCACCTCATTTGCAGAGAATCCAAAGAAATAGTTTGGTAACATCCATGCACAAGGGTAGCGAGAGGACCAAGTCAAAAGGCGACCCTTTCCCTAAATCTAGAGGAATGAAGGTTGAAGGAATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAGTTGGATTATGGTGATGCAAATGAGCTTGCCCTTCTCAATTGCTAG 756 47.22 MFLSSNALVMNTPDLSLQISLPSPDKPKPRSSDSSCCSGRSDLSSTHENGLFRLGFEMMGDRGGYRGFNVAHGRRDFKRSGGGVGGRRTVRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRPELEGDKIFSSSSSSVQNCSFQSPHLQRIQRNSLVTSMHKGSERTKSKGDPFPKSRGMKVEGMQRINLEFTLGRPSWQLDYGDANELALLNC 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20283853 20287230 - Sed0023978.1 Sed01g2622 701926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2622 251 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 146 IPR006447 GO:0003677(InterPro)
Sed01g2622 251 FunFam Myb family transcription factor 91 149 - -
Sed01g2622 251 MobiDBLite consensus disorder prediction 200 214 - -
Sed01g2622 251 MobiDBLite consensus disorder prediction 17 42 - -
Sed01g2622 251 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 238 IPR044847 GO:0000976(InterPro)|GO:0006355(InterPro)|GO:0010158(InterPro)
Sed01g2622 251 MobiDBLite consensus disorder prediction 196 216 - -
Sed01g2622 251 SUPERFAMILY Homeodomain-like 89 147 IPR009057 -
Sed01g2622 251 Pfam Myb-like DNA-binding domain 94 145 IPR001005 -
Sed01g2622 251 Gene3D - 92 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2622 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2622 Sed-Chr1:20283853 Sed01g4135 Sed-Chr1:70167897 2.10E-30 dispersed
Sed01g2622 Sed-Chr1:20283853 Sed10g1304 Sed-Chr10:28607527 7.80E-30 wgd
Sed01g2622 Sed-Chr1:20283853 Sed11g0991 Sed-Chr11:24908570 2.10E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed01g4135 . 184 368 G2-like Transcription Factor Family AT5G16560 53.5 5.4e-41 166.4
Sed01g4134 . 184 376 G2-like Transcription Factor Family AT5G16560 51.9 2.1e-40 164.5
Sed01g2622 . 11 166 G2-like Transcription Factor Family AT5G42630 60.7 9.1e-38 154.8
Sed13g1417 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1418 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1419 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1420 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed10g1420 . 1 353 G2-like Transcription Factor Family AT2G03500 57.1 1.6e-83 307.8
Sed03g1171 . 20 250 G2-like Transcription Factor Family AT1G25550 53.7 1.8e-51 200.7
Sed06g1866 . 15 251 G2-like Transcription Factor Family AT1G25550 52.5 3.5e-47 186.4
Sed03g1172 . 28 229 G2-like Transcription Factor Family AT1G25550 53.0 1.3e-41 167.9
Sed13g1417 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1418 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1419 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1420 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT5G05090 56.5 2.9e-75 279.6
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT5G05090 56.3 7.9e-73 271.6
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT5G05090 53.6 4.2e-66 249.2
Sed12g1174 . 1 252 G2-like Transcription Factor Family AT5G05090 53.9 9.7e-63 238.0
Sed02g1495 . 12 316 G2-like Transcription Factor Family AT4G13640 57.5 3.8e-60 229.6
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT4G13640 51.8 4.7e-58 222.6
Sed12g0381 . 12 141 G2-like Transcription Factor Family AT4G13640 71.8 8.3e-47 185.3
Sed01g4272 . 149 402 G2-like Transcription Factor Family AT3G04450 55.3 1.9e-54 211.1
Sed01g4273 . 149 403 G2-like Transcription Factor Family AT3G04450 54.9 9.5e-54 208.8
Sed01g4275 . 149 362 G2-like Transcription Factor Family AT3G04450 52.1 5.4e-49 193.0
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed08g1979 . 1 231 G2-like Transcription Factor Family AT1G69580 52.6 1.8e-45 181.0
Sed02g0909 . 47 248 G2-like Transcription Factor Family AT1G69580 53.2 3.3e-39 160.2
Sed02g0908 . 47 254 G2-like Transcription Factor Family AT1G69580 51.2 4.7e-38 156.4
Sed04g3560 . 1 346 G2-like Transcription Factor Family AT1G79430 58.0 2.5e-90 330.1
Sed04g3561 . 1 343 G2-like Transcription Factor Family AT1G79430 57.1 3.1e-88 323.2
Sed05g3314 . 1 362 G2-like Transcription Factor Family AT1G79430 53.7 4.6e-76 282.7
Sed01g0769 . 1 341 G2-like Transcription Factor Family AT1G79430 54.5 1.1e-74 278.1
Sed12g0380 . 40 206 G2-like Transcription Factor Family AT1G79430 61.7 2.8e-41 167.2
Sed02g1495 . 26 202 G2-like Transcription Factor Family AT1G79430 55.2 2.1e-36 151.0
Sed12g0381 . 40 169 G2-like Transcription Factor Family AT1G79430 60.8 2.7e-36 150.6
Sed10g0529 . 54 294 G2-like Transcription Factor Family AT2G01060 58.8 1.6e-53 207.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT3G10760 62.7 1.3e-93 340.9
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT3G10760 60.3 9.9e-89 324.7
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT3G10760 54.4 5.8e-73 272.3
Sed14g0045 . 1 201 G2-like Transcription Factor Family AT2G40970 61.7 5.3e-63 238.8
Sed03g2144 . 1 186 G2-like Transcription Factor Family AT2G40970 62.1 2.6e-57 219.9
Sed02g0794 . 1 180 G2-like Transcription Factor Family AT2G40970 64.5 5.3e-55 212.2
Sed01g4275 . 181 373 G2-like Transcription Factor Family AT2G20400 51.4 5.4e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37308 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Sed TF