Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2622 ATGTTTCTCAGCTCCAACGCCCTTGTCATGAACACGCCGGACCTCTCCTTGCAGATCAGCCTCCCGTCCCCCGACAAGCCGAAACCGCGAAGCTCCGATTCGTCTTGTTGCAGTGGGAGAAGTGATTTGAGCAGCACCCATGAGAATGGTTTGTTCCGGTTAGGGTTTGAAATGATGGGGGATCGTGGGGGTTACCGAGGTTTTAACGTTGCCCATGGCCGTCGTGACTTCAAGCGGAGCGGCGGTGGTGTCGGAGGGAGACGAACCGTTCGAGCTCCTAGAATGAGATGGACTACCACTCTTCATGCTCATTTTGTACATGCTGTTGAGCTTCTTGGCGGTCATGAAAGAGCTACACCAAAATCTGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACAGGACAGTGAAGAATACTGTCAAGGGAACAGATGATTGTGGAAGGCCTGAGCTTGAAGGAGATAAGATATTTTCTTCTTCTTCTTCATCTGTTCAAAATTGTAGTTTTCAGTCACCTCATTTGCAGAGAATCCAAAGAAATAGTTTGGTAACATCCATGCACAAGGGTAGCGAGAGGACCAAGTCAAAAGGCGACCCTTTCCCTAAATCTAGAGGAATGAAGGTTGAAGGAATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAGTTGGATTATGGTGATGCAAATGAGCTTGCCCTTCTCAATTGCTAG 756 47.22 MFLSSNALVMNTPDLSLQISLPSPDKPKPRSSDSSCCSGRSDLSSTHENGLFRLGFEMMGDRGGYRGFNVAHGRRDFKRSGGGVGGRRTVRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRPELEGDKIFSSSSSSVQNCSFQSPHLQRIQRNSLVTSMHKGSERTKSKGDPFPKSRGMKVEGMQRINLEFTLGRPSWQLDYGDANELALLNC 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20283853 20287230 - Sed0023978.1 Sed01g2622 701926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2622 251 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 146 IPR006447 GO:0003677(InterPro)
Sed01g2622 251 FunFam Myb family transcription factor 91 149 - -
Sed01g2622 251 MobiDBLite consensus disorder prediction 200 214 - -
Sed01g2622 251 MobiDBLite consensus disorder prediction 17 42 - -
Sed01g2622 251 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 238 IPR044847 GO:0000976(InterPro)|GO:0006355(InterPro)|GO:0010158(InterPro)
Sed01g2622 251 MobiDBLite consensus disorder prediction 196 216 - -
Sed01g2622 251 SUPERFAMILY Homeodomain-like 89 147 IPR009057 -
Sed01g2622 251 Pfam Myb-like DNA-binding domain 94 145 IPR001005 -
Sed01g2622 251 Gene3D - 92 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2622 Sed-Chr1:20283853 Sed01g4135 Sed-Chr1:70167897 2.10E-30 dispersed
Sed01g2622 Sed-Chr1:20283853 Sed10g1304 Sed-Chr10:28607527 7.80E-30 wgd
Sed01g2622 Sed-Chr1:20283853 Sed11g0991 Sed-Chr11:24908570 2.10E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37308 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2622 - - - 0.0