Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2625 ATGAAGGGTTGTTTGTTCATCTCTGCTCTTCTTCTTCAATCTTCATTTTTCTTTTTCACTTCGGCCCTTTCCGATGCCGAAGCTTCCTTCATTGCCCGCCGCCAGCTTCTAACCTTCCACGAGAACGATGATTTGCCCGACGATTACGAATCCAAGATCGTCGTCAATGAATCATTCCCCAATCCCCATCTCCGCCGAGCTTTCATCGCCCTCCGCGCATGGAAATCCGCCATTTATTCCGACCCCTTGAACACCACCGCCAATTGGGTCGGCTCCGATGTCTGCTCCTACACCGGCGTCTTCTGCGCCGAAGCTCTCGACAACCCCAAAGTCCAAGTCGTCGCCGGCATCGACCTCAACCACGCCGACATCGCCGGTTACCTTCCCATGGAACTGGGCTTTCTCACTGACATTGCTCTGTTTCACATCAACAGCAACCGATTCTGCGGCATTGTTCCCAAAACCTTCGACCGGTTGGTTCTCCTTCATGAACTCGATATCAGCAATAACCGATTTGTGGGTCCTTTTCCAGAAGTGGTTGTGAATATTCCCAATTTGAAGTACCTCGACATCCGATTCAACGACTTCGAAGGGGGATTGCCGCCTGCACTATTCACGAAAGAACTGGACGCAATCTTCCTCAACAACAACCGATTCGAGTCTTCGATTCCGGAGAATTTCGGGGACTCGCCGGCGTCGGTGATCGTGATCGCCAACAACAAGTTTTCGGGGTGTATTCCGAACAGCATCGGGAAAATGGGGAACACATTGAAGGAAGTGGTGATGTTGAACAATGATCTCGTGGGGTGTCTGCCCGGTGAGATTGGGCTGTTGGGAAACGCTACGATTTTGGATATTTCGTCGAACAAGTTGAGTGGGATTTTGCCGAAGAGCTTTCATGGGCTGAAAAGGGTGGAGCTGATGGATATTTCGTCGAATTCGTTGACGGGTTTTGTGCAGGAGGGGCTGTGTAAACTCCCCAAATTGAAGGATTTGTCATTTTCGAACAACTTCTTTAATGGCGAGGCGGATAGTTGCGTGGCGAAGAGGAACCGTAAGGAGGTTTCGTTTGATGATCGGAGTAATTGTTTGCCGGAGAGATCTGAGCAGAAGTCGAAGGCCACTTGTAGTGAGGTCATCGGTCAGGCGGTTGATTGCGGTAAGGCTATTTGCGGCAGAGGACCCTCGCCGCCGGTTGAAGATTCACATGAGCAATCTCCGTCCCCGAGATACCGCTCTCCTCCTCCACCTGTACTCCACTCCCCACCGCCGCCGGTTCACTCTCCTCCACCACCCCCGGTTCACTCTCCCCCACCTCCGGTCCACTCTCCACCACCACCTGTTCACTCTCCTCCACCGCCGGTTCATTCCCCACCACCGCCCGTTCACTCTCCTCCACCACCGGTTCACTCACCCCCACCGCCAGTCCACTCTCCACCACCGCCAGTCCACTCACCTCCGCCGCCGGTTCATTCACCTCCTCCACCGGTTCACTCTCCTCCACCACCGGTTCATTCACCTCCACCACCTGTTCATTCACCTCCACCGCCGGTTCACTCTCCACCACCACCGGTTCATTCACCCCCACCACCGGTTCGATCTCCGCCACCACCGGTCAAGTCTCCACCACCTCCGGCAAAGTCTCCGCCGCCGCGACAAGAGGACATAATTCTTCCACCGAACATTGGGTTCCAATACTCATCACCACCTCCACCGTTGTTTCCGGGCTACTAA 1734 54.21 MKGCLFISALLLQSSFFFFTSALSDAEASFIARRQLLTFHENDDLPDDYESKIVVNESFPNPHLRRAFIALRAWKSAIYSDPLNTTANWVGSDVCSYTGVFCAEALDNPKVQVVAGIDLNHADIAGYLPMELGFLTDIALFHINSNRFCGIVPKTFDRLVLLHELDISNNRFVGPFPEVVVNIPNLKYLDIRFNDFEGGLPPALFTKELDAIFLNNNRFESSIPENFGDSPASVIVIANNKFSGCIPNSIGKMGNTLKEVVMLNNDLVGCLPGEIGLLGNATILDISSNKLSGILPKSFHGLKRVELMDISSNSLTGFVQEGLCKLPKLKDLSFSNNFFNGEADSCVAKRNRKEVSFDDRSNCLPERSEQKSKATCSEVIGQAVDCGKAICGRGPSPPVEDSHEQSPSPRYRSPPPPVLHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVRSPPPPVKSPPPPAKSPPPRQEDIILPPNIGFQYSSPPPPLFPGY 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20317195 20318928 + Sed0000577.1 Sed01g2625 701929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2625 577 MobiDBLite consensus disorder prediction 394 577 - -
Sed01g2625 577 Pfam Leucine Rich Repeat 162 179 IPR001611 GO:0005515(InterPro)
Sed01g2625 577 Pfam Leucine Rich Repeat 185 204 IPR001611 GO:0005515(InterPro)
Sed01g2625 577 Gene3D Ribonuclease Inhibitor 68 364 IPR032675 -
Sed01g2625 577 Pfam Leucine rich repeat 282 337 IPR001611 GO:0005515(InterPro)
Sed01g2625 577 Pfam Leucine rich repeat N-terminal domain 70 102 IPR013210 -
Sed01g2625 577 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 505 IPR051582 -
Sed01g2625 577 SUPERFAMILY L domain-like 69 357 - -
Sed01g2625 577 PRINTS Proline rich extensin signature 436 453 - -
Sed01g2625 577 PRINTS Proline rich extensin signature 454 479 - -
Sed01g2625 577 PRINTS Proline rich extensin signature 418 434 - -
Sed01g2625 577 PRINTS Proline rich extensin signature 397 418 - -
Sed01g2625 577 MobiDBLite consensus disorder prediction 409 556 - -
Sed01g2625 577 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2625 Sed-Chr1:20317195 Sed09g0043 Sed-Chr9:356135 3.60E-54 dispersed
Sed01g2625 Sed-Chr1:20317195 Sed10g1400 Sed-Chr10:30049672 7.50E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2625 - - - 0.0