Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g2626 | ATGGCGGTCGCTACTGATCCAATCGGTTCCATGCAGCAACTTGTCCAGACCATTCAGGCGGTTCAGGCGCCGCCGTACACGGCGGCCGCCGTCGTGGGTGGCGTCTCTTTGTTTCTCTCGGCGTATCTCATCGGCGATTGGAAGAAAAAACGTCGGAGTCTTCTCCCTCCGGTGCCGGCGATTCCGGGTGTGCCGGTGCTGGGGAATTTGTTGCAGTTGACGGAGAAGAAGCCGCACAAAACGTTTGCACGGTGGTCGGAGAAATACGGTCCGGTTTATTCCATTAAAACCGGCGCCTCTACTGTGATTGTTCTCAATACTCCTGAGGTCGCCAAAGAGGCTATGGTGACTAGGTACTCTTCCATTTCCAGTAGAAAGCTAAGCAAAGCTCTCACCATTTTGACTTCTGATAAATGCATGGTTGCTATGAGTGATTACAATGACTTTCACAAGATGGTTAAGAGATATATATTGGCTAATGTCTTGGGGCCTAAGGCACAGAGGAAACACAGGGAAAGGAGAGACACCATGATTGATAATATTTCCAGCCATTTGTTTTCTCATGTGAAGGAATTTCCCTCAGAATCTGTTAATTTTCGAAAGATCTTCGAAGAAGAACTCTTTCGGCTGGCGCTTAAAGAAACGCTTGGGAAGGATATTGAGTCGATATATGTCGCAGGGCTTGGTACGACGTTGCCGAGAGATGATCTGTTCAAAGTCTTGGTGATTGATCCATTGGAGGGTGCGATCGAGGTTGATTGGAGAGATTTCTTCCCATATCTGAGATGGATACCTAACAAGGGTGTGGAGAATAGGATCAGGCAAATGGATTTTCGCAGGGGAGTGACGATGAAGAGCCTTCTCGAGGATCAGAAAAAGCGAATTGCAGCTGGGGAGGAAACAAATAGTTATGCTGATTTCTTGTTAGCTGAAGCAAATACACTTACAGAAGAACAAATATCTATGTTGCTTTGGGAGACAATCATTGAAACGTCTGACACTACTTTGGTTGCAACAGAATGGGCTATGTATGAACTTGCTAAAGATCCTAAACGACAGGAGTATCTATATAAGCATATACAGAGTGTCTGTGGATCTGCAAAGGTTACTGAAGACAACCTCTCGCAGCTTCCATACTTGACTGCTGTGTTTCACGAAACTCTTCGGTTGCACAGTCCAGTCCCGGTTGTCCCATTGCGATATGCGCATGAAGATACCCAATTAGGTGGTTACTATGTTCCTGCAGGAAGTGAGATCGCCGTGAACATTTATGCATGCAACATGGACAAGCAACACTGGGAAAGCCCTGAGGAATGGAAGCCAGAGAGGTTTCTTGATGAAAAGTATGATCCAATGGATCTGCACAAAACCATGGCATTTGGAGGAGGGAAGAGGGTGTGTGCAGGTGCTCTCAAGGCAATGCTGATAGCTTGCACAACCATTGGAAGGGTGGTTCAAGAGTTCGAGTGGAAGCTCAGGGAAGGGGAAGAAGATAAGGTGGACACTCTCGGTCTCACTGCTCGCAAGCTCCTGCCACTGCACGTTGTCGTAAAGCCGAGAATCAACTGA | 1569 | 47.23 | MAVATDPIGSMQQLVQTIQAVQAPPYTAAAVVGGVSLFLSAYLIGDWKKKRRSLLPPVPAIPGVPVLGNLLQLTEKKPHKTFARWSEKYGPVYSIKTGASTVIVLNTPEVAKEAMVTRYSSISSRKLSKALTILTSDKCMVAMSDYNDFHKMVKRYILANVLGPKAQRKHRERRDTMIDNISSHLFSHVKEFPSESVNFRKIFEEELFRLALKETLGKDIESIYVAGLGTTLPRDDLFKVLVIDPLEGAIEVDWRDFFPYLRWIPNKGVENRIRQMDFRRGVTMKSLLEDQKKRIAAGEETNSYADFLLAEANTLTEEQISMLLWETIIETSDTTLVATEWAMYELAKDPKRQEYLYKHIQSVCGSAKVTEDNLSQLPYLTAVFHETLRLHSPVPVVPLRYAHEDTQLGGYYVPAGSEIAVNIYACNMDKQHWESPEEWKPERFLDEKYDPMDLHKTMAFGGGKRVCAGALKAMLIACTTIGRVVQEFEWKLREGEEDKVDTLGLTARKLLPLHVVVKPRIN | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 20322618 | 20324831 | + | Sed0002142.1 | Sed01g2626 | 701930 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g2626 | 522 | Gene3D | Cytochrome P450 | 43 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PANTHER | ENT-KAURENE OXIDASE, CHLOROPLASTIC | 18 | 520 | IPR044225 | GO:0005506(InterPro)|GO:0005783(PANTHER)|GO:0009686(PANTHER)|GO:0009686(InterPro)|GO:0009707(PANTHER)|GO:0010241(InterPro)|GO:0010241(PANTHER)|GO:0016709(PANTHER)|GO:0020037(InterPro)|GO:0052615(InterPro) | |
| Sed01g2626 | 522 | FunFam | Ent-kaurene oxidase 2 | 49 | 522 | - | - | |
| Sed01g2626 | 522 | CDD | CYP77_89 | 88 | 514 | - | - | |
| Sed01g2626 | 522 | PRINTS | E-class P450 group I signature | 110 | 131 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | E-class P450 group I signature | 86 | 105 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | E-class P450 group I signature | 339 | 365 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | E-class P450 group I signature | 457 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | E-class P450 group I signature | 467 | 490 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | Pfam | Cytochrome P450 | 62 | 499 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | P450 superfamily signature | 458 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | PRINTS | P450 superfamily signature | 330 | 347 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2626 | 522 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 460 | 469 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g2626 | 522 | SUPERFAMILY | Cytochrome P450 | 56 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2626 | Sed-Chr1:20322618 | Sed02g0797 | Sed-Chr2:45657983 | 2.50E-54 | dispersed | |
| Sed01g2626 | Sed-Chr1:20322618 | Sed13g1703 | Sed-Chr13:22083083 | 9.50E-256 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g2626 | K04122 | - | csv:101209283 | 897.116 |