Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2636 ATGGATCTGGAGAGACTACCCCGAGGTATCACAACCAGGATTTTTCTATTGCTGGACCATGAAGACCTTGGCTCGGTCGCATGCGTGAGTCGTAAGCTAAATGCAGCCGTCTACGAGGCCCTTTCGATTCACCATACACTCCATCTTCCCATGTCTTTCTCCCCAGATTTCATAAAGGGCGTTCTTCTTTTCTACAAACGTCCGATCACAGTTATCCTTAATTGCCTCTGCCTCCACCCCGTGTCTATCCTACCTGTTCTTGGCCAGTCTCTCGAGGATTTGAGGTTGTTTAGGTGTTCTTTATTTACTCCTCGGTTCTTGGACACATTGGGCCAACATTGTCCCAACCTGAAAAACTTGCCTAAATTTCTACAAAAATGTATCAAATTAGAGTCAATCTCCCTCAATCTTGGAGGCTCAGAGGATTATCGTTTTGAAGCCCTTGACACATTTCTCACCAAAACAACTAAAAGATTGAAGTTGAAGACAATTGTTCTTTCAGATGCAATCGACTTTATGGAGAACATGAATTCTTTGTCTGTACCCTCTTATTCTGCAAATCCTCAATCAAGTACTAGTTCACAACCTTCAAAATTAACCCTTACATCATTGTCACTTACGTTGAACTTTATGTCGGATAGATTAGTGAAAGCAATTGCCACATCACTCCCTTTCCTCATCGAGCTCCACTTGGAAGACCTACCCCATCAAAATCCCAACATCCCAATTGACGACCTGACAAATGATGGAATGGAGTCACTAAGTTCGTGTAGCAATCTCCAGTCAGTTTCTCTCTTTCGTGGTAGATTCAACCACGAAATTTCTTTCACACAGGTGAACGACGTAGGTTTGTCTCACTTGTCTAATTGTACGAGTCTCGAGTCAGTGAGATTTTGTGGATTCTCACAAGTTAGTGATGCTGGATTTTCATCCATCATTACCTCGTGTCATAGGTTGAACAAATTTGAAATCCGTAACGCACCACAGTTGTCTGACCAGCCATTCATCCTATTTTATACTTTTCGTCACTCTTTAACTGTGTTCAGAGTACTGTCATGTGGACTCATAACTCATGAATGTATGACACATCTGACCTCATCCACACTTTTGAACCTTATTGATCTTTCTCGCTGCAACAACATTACAGATGAATGCCTCGACTTCATTTCTAACTTGCAGTTTTTGACATCATTAAATCTAACTGCAACTGCTATAACCGACAATGGTTTAACCCTTCTTAGTGAAGGGAGTGCGCCAATCGTACGCCTATCTCTGAGAGGTTGTGAGGGGGTAACAGACGACGGAATTATTCACTTATTTCAAGGTAGATTGAGAAGAACAGTATCAACCTTGGATATTGGACAAAATTCTAGAATAACCGATAGAGCAATCGAAACAATTGCTTCCCAAGGTGTCGAGATTACTGAGCTGTGCATCCGATCCTGCTTTAATCTTACCCATGTGTCAGTGCGAGCTTTGGCGAATAAGAAACAACTCCAAGGTGAACAAGGAAAACTGCTTCGTATGCTTGATATGTGGAACTGTACAGATATGTCAGGTAGTTCAATTTTGTCGTTTAAGAAGGGATTCTTTCCTGGATTGCGTTGGCTTGGCATAGGCGAAACTCTTTTTGGTGAGTGGAGTTTTATTTTTGCGGAGTTAAATTTTCGAAAACCATGGTTGAAAGTCTGCCGGATTGGATGTGAAATGGGTTGTCATAATGGATGGCAAAAAGGCCATACATAG 1746 41.81 MDLERLPRGITTRIFLLLDHEDLGSVACVSRKLNAAVYEALSIHHTLHLPMSFSPDFIKGVLLFYKRPITVILNCLCLHPVSILPVLGQSLEDLRLFRCSLFTPRFLDTLGQHCPNLKNLPKFLQKCIKLESISLNLGGSEDYRFEALDTFLTKTTKRLKLKTIVLSDAIDFMENMNSLSVPSYSANPQSSTSSQPSKLTLTSLSLTLNFMSDRLVKAIATSLPFLIELHLEDLPHQNPNIPIDDLTNDGMESLSSCSNLQSVSLFRGRFNHEISFTQVNDVGLSHLSNCTSLESVRFCGFSQVSDAGFSSIITSCHRLNKFEIRNAPQLSDQPFILFYTFRHSLTVFRVLSCGLITHECMTHLTSSTLLNLIDLSRCNNITDECLDFISNLQFLTSLNLTATAITDNGLTLLSEGSAPIVRLSLRGCEGVTDDGIIHLFQGRLRRTVSTLDIGQNSRITDRAIETIASQGVEITELCIRSCFNLTHVSVRALANKKQLQGEQGKLLRMLDMWNCTDMSGSSILSFKKGFFPGLRWLGIGETLFGEWSFIFAELNFRKPWLKVCRIGCEMGCHNGWQKGHT 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20974054 20977837 - Sed0016468.1 Sed01g2636 701940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2636 581 SUPERFAMILY RNI-like 198 528 - -
Sed01g2636 581 PANTHER UNCHARACTERIZED 81 389 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Sed01g2636 581 SMART LRR_CC_2 367 392 IPR006553 -
Sed01g2636 581 SMART LRR_CC_2 504 529 IPR006553 -
Sed01g2636 581 SMART LRR_CC_2 290 315 IPR006553 -
Sed01g2636 581 SMART LRR_CC_2 88 113 IPR006553 -
Sed01g2636 581 SMART LRR_CC_2 417 442 IPR006553 -
Sed01g2636 581 SMART LRR_CC_2 449 470 IPR006553 -
Sed01g2636 581 SMART LRR_CC_2 471 496 IPR006553 -
Sed01g2636 581 CDD F-box_SF 4 38 - -
Sed01g2636 581 Gene3D Ribonuclease Inhibitor 273 364 IPR032675 -
Sed01g2636 581 Gene3D Ribonuclease Inhibitor 1 272 IPR032675 -
Sed01g2636 581 Gene3D Ribonuclease Inhibitor 387 542 IPR032675 -
Sed01g2636 581 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515(InterPro)
Sed01g2636 581 SUPERFAMILY RNI-like 87 266 - -
Sed01g2636 581 SUPERFAMILY F-box domain 3 69 IPR036047 GO:0005515(InterPro)
Sed01g2636 581 Pfam F-box-like 3 48 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2636 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2636 Sed-Chr1:20974054 Sed07g2790 Sed-Chr7:42851520 3.70E-123 dispersed
Sed01g2633 Sed-Chr1:20410334 Sed01g2636 Sed-Chr1:20974054 0.00E+00 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .