Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2640 ATGGAGAATGTTACAGTTCTCTCCATTTCCGAGCTGATCGAGCATCGTCTTCCTCTAACTGGAACTCTTCATCAGTCTTCTTCCTGCAACTCAGTTCAATCAATTTCAAGGCCTGTACCATCAGCAGAATCGAACCCTAGCCCTAAAGTTCTTACTTCTCTAAAACATCCAGCCATCATCACCGGAACCCTAAATCTCCTGGCAGATGATCCGGCGCCGTCCAACTCAAAGTCCTCCTGTCCGTGCTCCAGCAGCAACAGTTGCTTTCAGTTCACTGATGGCTCCGGGACTATTTGCTGTGATATACTCGACCTCGACGTTCGGATGATCGGGAAAGACATTCGAGTCTTGTCTTGGAATTTCATTCCGTGGGGAAGTGCTGGAGGATTCTTGGAAATCATCAAATGGGACTATCTTTGTCCGTGCCCCAACGCCGATCCAGTTCTTTTGGATTCAGGTAATTTCTCTACTTCTGCTCATAATTTGAAGCCTCGGCATTGTGTTTATGGTGTATTAGAGTCGGTCGGTCCAGTTTCTGTTGTTCCGTGTACTGTTGGCCCGAGAGATTCGAAGAGCGCCGGGGTGTCTGATTCTTCTGTCGACTCGAAAAATCTCCGGGGATTTATGGTTCTAATCATGGTTTGTGAGTGTCGGTCGTGTTCTTCTAAGGACTCGATGACATTACCTGAAGGAGAACATGCTACTCATTCATTTGTGAAACCGATTGTCGTGTATCTTTGTGGTTCCGCGTCGTTTTGGCACCCTGTTGTAACGAAATTTGTGGGGAGATTTGCAACGTTTGGGAACTTGAAAAAGAAGTTGGTCTCCATTGGTAAGGCAGAGTCCTGTTTGATGTATGTTAGCACGGATAAATCTTCGATCCATCTATCTGCATCGTCTCGTATATGGCTTCCGAGCAAGAAAACTGCCATTAAAGGGAAGGGAGAATGTGGGTCATACACGGGTATAATCAAAGGAGTATATATGCAAGGAATGCTGGTTGAGCTCGAGAATGAGGTCTGGCTTTTGTTGACTGATCACTTGCTTTCTCCACCTCATAGTCTGAGAGTAGGCGCTATTATTTCTGTGCGCAATGTCCACTTTGTGAATCCTAGATTTCATTGGTCAAAACTGCTTCTACTTGGTGCTTGCGTCAAGTCTAGCATTTTCGTGCAGCTATTTTCTCCATTGGAAACCAAGTGTCATGTCCTTTCACGGTCGAGGTGTATGTTGGGGAAGTTTATCGACACCTTGCCTTTTTCAGCAAGACTTTGGGTATTGATCCTTATTTCTTCTTTTCGGAAGATGTTTGCTGGTGTTTTATCGGAAAAGAAAATTTTGGGATCAAAACATAAGGAAGGACTGGTACAAACGTATGCCAAATCACATTTACCTTCATCTATTTATCCATATCAGCATGGAGCAATGATGAAACTGTACGAGCATGATTCATGTGGCTGTGGTAGTGAACCATGCAGCATTAACCTTCAAACTGTGATCCCCATCTCTGTTTTAATATTCTATTGTAATTTAACGGGGATGAGAGCCATGGGGTTGAAAAATGGAGTTACTATGTATGAATTGAACCAGCTTGACCACTTCAGACTTCTATCATCTAGTCGTATAACTTTTCATCAGCCAACAAGGAAAGTTTATCGAAGTGAGGATATTGGCTTTGTTTTGGTTGGCAGTTTGAAGATTTCCACGTATTCCGGAAATTTGCAGTTGGTTGATGCAACTGGAGGTGTCAATGTTGTGGTACCAGACCTCCCATCAACTTGGAACGTTGATGAGATATATGAGGTAACAAAATATATTATGGTCATTGAAGGCATTCCACAAATGGAGAAATATTTGGTCAATCAGCCATTCTCATGTCGAAGTTTTTTCCAGAGCATCTCATTGGAAAGAAATCTTAGAATAGCAATTTATGTTTATTTCCAATACCGTGATGCAACCTGCAAGAATCTGCCCTTATATTCTTGCGTCGACAATGGGTCTGCTTTTGAGATCTTCGAAAGTGGAAGTTATCACCTGCTACAAATAACGCACAAGTTTCCCATGTTGCAAAAGTTTAAAGGTAAACAACGGGTTCCAAACACATCAAGCATGTTTGTTGAGGCTGTACTCTATCCTTGGAATTTATTTCTCACTGAAAGGGATAAGAAATTTTCAACAAACGCTTCAATGAAGCATCTGAGGGAAGAAGATTCCGTAACTTCAAATTATCAGAATTATGCTGATAAGAGACTCAAAGTTGATCATCCATCAAGGTGGGTAAAAGGTTCAGATATAGTTTGTAACTTTGATGCTTCTAGCTGTTGGTATAATCGTTGTTGTGATTGTCACAGAGGACCTCGTGAGGAATGCAAATGTTGCAACTTGAGCCATCACAGAATTTCATGTGTAGCTACTATTAGGAGTCCAAGGCGTAGTAGCCAATACATGTCAGGTTTCTTATACAACACAAGAAGCAAACCGAGTAGCGGCAATGGTTCCAAATTAAGTACTCAAAAGATTTTGTTGGAGATCGAACCTGAAAGTCTTTTGAAATATCAGTTCCTGCAGATTGGCAATTACTACATCATTAAGTGTAGTAATGATCATTCTTTATTCAACATAGAGGAATGCAATTGTGTCAACAACCAAAAGTTTCTTATAACTTCAAGTATACATTTATGGAGCATCTCATTCACTTTTGATGATGATTTCCTCCGTAGTATTGAATCACATGACAATCAGTTCAAAGACTCTCGGTTCTGTGATAGCGAAGTGATTTCAGGAGATCGAATTGATTTGCGTCATGGATCATTTTCAGATATATATCTTCATCTTCCCGGAAATGCAAAAAATATTTTGGTGTTCGATGTTGAAAAACAAAAAGAAAATTCAACCAAACTAACTTCTCCCTGTTATAGAGACGTGACATCTTCGGACATGCAAGCCTCTGTTTTCTGTGGATCCGACTGTCTGTTTCCTGAGGGTAACCTATCATCCCTAAAAGGTCGTGTGATTGCAGTTCATGATCTTCATCAAAGTTGCATTAATTCTGGTTTAAAATGTCCAAGTAGTACTACAGATGGTAGCCAGTGCGGACTCATTGTGGGTGCAAAAAGTAGTTGTATTCATCTTCTGGTAGAGGACAAAATTGTGAAAGTTTTTGGTTATCTGAAGAATTATGCTTTACCTGTTGGATTTGGACTTGGTGTGAGTGCAACTTTCCATCGAGTTTTGGAATTGGGGGATCAACAAAGATTGCTGACTCCGATTTCTTTCATAGACATCAATTCTATCATTGTACTTGATCATTCATCTACTGAGAAATATTCCGACTCAATCTCATCTTCAGACACCATTTCTTTGCAACTATTTTCTGAACTATTTCACTCCGTGGACTGCAAGTTAACGAAGTTCCGTTGCAGAGTTGTTGCTGTAAATTTTTTAGTCCTGGAAAAGAACATTGATCACGTCAATTTGCAAGTTGAAACTTCTAATAGGCAACCTCTTGTAAAGATTCCTCTTGCTGGCTTCATGTTGGATGATGGTTCATCCAGATGCAACTGCTGGACTAGCAGTGAAAGAGCAGCAGCCTTGTTGCGGCTGCACGATCCACTTTCACATTCAGCTTTCGAAAACATTGACTGGACATTAAAATGGACTGGGATGACTCATAGTCATAGCTCTCATGCCACTGCAAGCTATCATCTGGGACGGGTTCTGAAGAAGCATGGTAGAATCGTTGTGAGAAGTTGCGGGTCAAACTCAATCCTCAATCCTTATGACGGCCTCGATATTTCTCTTGCTTCAAATGATGCTCTCAGCATTGCAGATGAGAGCTTCCTCAAGTTCATACTTGTCCATTCATGTGTTGGTGCCATTTGGACCCTCATTGGGAGTCGACTGGATACCGATGCTGTTCGGAGTTTGTTAAAGGGACACACAATGGAACCAGGGTTGATGCAGTCGCGTGATATATGGGTGGCGGATGTTTATCGTACAAACGCTCTTAATGAAGCCAGGAATGCTCTCCTAGAACTGATGAACAGTTGA 4050 41.48 MENVTVLSISELIEHRLPLTGTLHQSSSCNSVQSISRPVPSAESNPSPKVLTSLKHPAIITGTLNLLADDPAPSNSKSSCPCSSSNSCFQFTDGSGTICCDILDLDVRMIGKDIRVLSWNFIPWGSAGGFLEIIKWDYLCPCPNADPVLLDSGNFSTSAHNLKPRHCVYGVLESVGPVSVVPCTVGPRDSKSAGVSDSSVDSKNLRGFMVLIMVCECRSCSSKDSMTLPEGEHATHSFVKPIVVYLCGSASFWHPVVTKFVGRFATFGNLKKKLVSIGKAESCLMYVSTDKSSIHLSASSRIWLPSKKTAIKGKGECGSYTGIIKGVYMQGMLVELENEVWLLLTDHLLSPPHSLRVGAIISVRNVHFVNPRFHWSKLLLLGACVKSSIFVQLFSPLETKCHVLSRSRCMLGKFIDTLPFSARLWVLILISSFRKMFAGVLSEKKILGSKHKEGLVQTYAKSHLPSSIYPYQHGAMMKLYEHDSCGCGSEPCSINLQTVIPISVLIFYCNLTGMRAMGLKNGVTMYELNQLDHFRLLSSSRITFHQPTRKVYRSEDIGFVLVGSLKISTYSGNLQLVDATGGVNVVVPDLPSTWNVDEIYEVTKYIMVIEGIPQMEKYLVNQPFSCRSFFQSISLERNLRIAIYVYFQYRDATCKNLPLYSCVDNGSAFEIFESGSYHLLQITHKFPMLQKFKGKQRVPNTSSMFVEAVLYPWNLFLTERDKKFSTNASMKHLREEDSVTSNYQNYADKRLKVDHPSRWVKGSDIVCNFDASSCWYNRCCDCHRGPREECKCCNLSHHRISCVATIRSPRRSSQYMSGFLYNTRSKPSSGNGSKLSTQKILLEIEPESLLKYQFLQIGNYYIIKCSNDHSLFNIEECNCVNNQKFLITSSIHLWSISFTFDDDFLRSIESHDNQFKDSRFCDSEVISGDRIDLRHGSFSDIYLHLPGNAKNILVFDVEKQKENSTKLTSPCYRDVTSSDMQASVFCGSDCLFPEGNLSSLKGRVIAVHDLHQSCINSGLKCPSSTTDGSQCGLIVGAKSSCIHLLVEDKIVKVFGYLKNYALPVGFGLGVSATFHRVLELGDQQRLLTPISFIDINSIIVLDHSSTEKYSDSISSSDTISLQLFSELFHSVDCKLTKFRCRVVAVNFLVLEKNIDHVNLQVETSNRQPLVKIPLAGFMLDDGSSRCNCWTSSERAAALLRLHDPLSHSAFENIDWTLKWTGMTHSHSSHATASYHLGRVLKKHGRIVVRSCGSNSILNPYDGLDISLASNDALSIADESFLKFILVHSCVGAIWTLIGSRLDTDAVRSLLKGHTMEPGLMQSRDIWVADVYRTNALNEARNALLELMNS 1349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20997381 21012195 + Sed0017871.1 Sed01g2640 701944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2640 1349 Pfam CST, telomere maintenance, complex subunit CTC1 54 359 IPR028262 GO:0000723(InterPro)
Sed01g2640 1349 PANTHER CST COMPLEX SUBUNIT CTC1 1 1345 IPR042617 GO:0003697(PANTHER)|GO:0010833(PANTHER)|GO:0042162(PANTHER)|GO:0045740(PANTHER)|GO:1990879(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2640 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2637 Sed-Chr1:20997350 Sed01g2640 Sed-Chr1:20997381 0.00E+00 dispersed
Sed01g2638 Sed-Chr1:20997350 Sed01g2640 Sed-Chr1:20997381 0.00E+00 dispersed
Sed01g2639 Sed-Chr1:20997350 Sed01g2640 Sed-Chr1:20997381 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g824 . Blo12g00943 . . . . . . . . . Cma09g00208 . . . Cpe06g00142 . . . . . . . . . . . . . . . . . . . . Csa04g02376 . . . . . . . . . . Sed01g2640 . . . . . . . . Bhi09g03368 Tan01g4831 Cmetu07g1013 . . . . Cla05g02003 Cam05g2154 Cec05g2172 Cco05g2219 Clacu05g2146 Cmu05g2016 Cre05g2142 . . Chy07g00105 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005908 1 9 1 1 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 2 39