Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2652 ATGACCACGCGGAGTGAACATCAAACAGTCCCGCTCTCTGTGCTTCTGCAGCGTGAATTGGCAATTGAGAAGATTGAGAAACCGGAAATCATATACGGTCAGGCGAATCATAGTAAGAAAGGGGAGGATTTTACATTGCTAAAGACGGATTGTGAGAGAGGGGTCGGAGATGGAGGATCTACGTTTTCTGTTTTTGGGATTTTTGATGGACATAATGGATCTGCTGCTGCTATTTACACCAAGGAGAATCTGTTGCACAATGTTTTAGCTGCTATTCCATCAAATCTCAACAGAGATGATTGGGTTGCGGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACGGATAAGGATTTTCAAGCGAGAGCACAAACATCAGGAACCACCGTCACCTTTATGATCATTGAGGGATGGGTTGTCACTGTTGCTTCTGTTGGTGATTCCCGTTGCACATTGGAATCAGCTGATGGCATCTACTACTTATCAGCAGATCATAGACTAGAATGCAATGAAGAGGAGAGAGAACGTATAATTTCTAGTGGCGGTGAGGTAGGGCGACTGAATACTGGTGGTGGTGCAGAGATTGGTCCATTGAGATGCTGGCCCGGTGGCTTGTGTCTATCACGATCGATTGGTGACATGGATGTTGGTGAGTTTATAGTGCCTGTTCCATACGTGAAGCAAGTTAAGGTATCTTCTACTGGTGGCAGGGTTATTATTTCGAGTGATGGTGTTTGGGATGCTATATCGGCTGAAACTGCCTACGATTGTAGTCGAGGGATGCCAGCAGAAACTGCTGCTGCACAGATTGTGAAGGAAGCAGTACAGTTAAAGGGACTTCGAGATGATACTACATGTATCGTGATTGATATAATACCAAAGGAAAAACCATCTGCTGCTTTGCCACCACCAAAGAAGCAGGTAAAAAAAATGATTAAATCAATGTTCCGCAAAAGATCGTCTGAATCATCTTCTCATTGTGAGAAGGAATATAATGAGCCAGATGTTGTTGAGGAATTATTTGAGGAAGGATCAGCCATGCTGTCAGAAAGGCTAGATGCCAAGTATCCTATCTGCAACATGTTTAATCTGCGCGTGTGTGCTGTATGTCAAGTTGAGATCCAACCTCGGGAGGGTATTTCCATATATGCCGACTCATCTAACAGAGGAAAATTGCGTGCTTGGGACGGACCCTTTTTGTGCTTAAGTTGCCAAGAGAAGAAAGAAGCTATGGAAGGGAAAAGACTATCTGGAGATGGAAACAGCAGTGGAAGTGACTAG 1284 44.47 MTTRSEHQTVPLSVLLQRELAIEKIEKPEIIYGQANHSKKGEDFTLLKTDCERGVGDGGSTFSVFGIFDGHNGSAAAIYTKENLLHNVLAAIPSNLNRDDWVAALPRALVAGFVKTDKDFQARAQTSGTTVTFMIIEGWVVTVASVGDSRCTLESADGIYYLSADHRLECNEEERERIISSGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKVSSTGGRVIISSDGVWDAISAETAYDCSRGMPAETAAAQIVKEAVQLKGLRDDTTCIVIDIIPKEKPSAALPPPKKQVKKMIKSMFRKRSSESSSHCEKEYNEPDVVEELFEEGSAMLSERLDAKYPICNMFNLRVCAVCQVEIQPREGISIYADSSNRGKLRAWDGPFLCLSCQEKKEAMEGKRLSGDGNSSGSD 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21139485 21145128 + Sed0011560.2 Sed01g2652 701956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2652 427 CDD PP2Cc 39 292 IPR001932 -
Sed01g2652 427 FunFam probable protein phosphatase 2C 12 32 298 - -
Sed01g2652 427 PANTHER PROTEIN PHOSPHATASE 38 291 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g2652 427 Pfam Protein phosphatase 2C 54 276 IPR001932 -
Sed01g2652 427 Gene3D - 31 300 IPR036457 -
Sed01g2652 427 SUPERFAMILY PP2C-like 36 292 IPR036457 -
Sed01g2652 427 ProSiteProfiles PPM-type phosphatase domain profile. 24 292 IPR001932 -
Sed01g2652 427 SMART PP2C_4 21 290 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2652 Sed-Chr1:21139485 Sed13g1733 Sed-Chr13:22324029 7.10E-217 dispersed
Sed01g2651 Sed-Chr1:21139485 Sed01g2652 Sed-Chr1:21139485 1.50E-246 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2652 - - - 0.0