Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2682 ATGGAGGAGGGACTTCAAGTTTGCAGCAGGGAGAAGAGAAAGCAAATCACGCATCATCATGAAAAGCCCTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAAATCAGAGAGCCCAACAAGCGCTCCAGGATTTGGCTCGGCTCTTACTCCACCCCGCTCGCCGCCGCTCGCGCTTACGACACCGCTGTCTTCTACCTCCGTGGCCCCACCGCTCGGCTTAATTTTCCCCATTTGATCTTGGAGGAGGGCCGCCTTCTTTCCGACGTGTCCCCCGCCTCCATTCGCAAACGAGCTACCGAGGTCGGCGCCAGGGTCGACGCCTCGACTAAATTCAACGCTCATCATCTTCTTCAGAACCCTGATTTGAACGAGTATCCTAACCCTGAATCCTCACAGGACGATTAG 417 55.4 MEEGLQVCSREKRKQITHHHEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPLAAARAYDTAVFYLRGPTARLNFPHLILEEGRLLSDVSPASIRKRATEVGARVDASTKFNAHHLLQNPDLNEYPNPESSQDD 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21493109 21493861 - Sed0007508.1 Sed01g2682 701986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2682 138 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2682 138 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2682 138 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2682 138 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g2682 138 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677(InterPro)
Sed01g2682 138 Pfam AP2 domain 24 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2682 138 CDD AP2 24 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2682 138 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Sed01g2682 138 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2682 138 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 136 - -
Sed01g2682 138 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2682 Sed-Chr1:21493109 Sed11g1821 Sed-Chr11:33024469 1.10E-20 dispersed
Sed01g2682 Sed-Chr1:21493109 Sed10g0653 Sed-Chr10:4487343 2.30E-36 wgd
Sed01g2682 Sed-Chr1:21493109 Sed11g0932 Sed-Chr11:23467725 1.40E-41 wgd
Sed01g2682 Sed-Chr1:21493109 Sed13g1770 Sed-Chr13:22730158 1.10E-49 wgd
Sed01g2682 Sed-Chr1:21493109 Sed14g0864 Sed-Chr14:17345118 5.10E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37311 PF00847 AP2 4.30E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2682 K09286 - csv:101204958 187.193