Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2682 | ATGGAGGAGGGACTTCAAGTTTGCAGCAGGGAGAAGAGAAAGCAAATCACGCATCATCATGAAAAGCCCTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAAATCAGAGAGCCCAACAAGCGCTCCAGGATTTGGCTCGGCTCTTACTCCACCCCGCTCGCCGCCGCTCGCGCTTACGACACCGCTGTCTTCTACCTCCGTGGCCCCACCGCTCGGCTTAATTTTCCCCATTTGATCTTGGAGGAGGGCCGCCTTCTTTCCGACGTGTCCCCCGCCTCCATTCGCAAACGAGCTACCGAGGTCGGCGCCAGGGTCGACGCCTCGACTAAATTCAACGCTCATCATCTTCTTCAGAACCCTGATTTGAACGAGTATCCTAACCCTGAATCCTCACAGGACGATTAG | 417 | 55.4 | MEEGLQVCSREKRKQITHHHEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPLAAARAYDTAVFYLRGPTARLNFPHLILEEGRLLSDVSPASIRKRATEVGARVDASTKFNAHHLLQNPDLNEYPNPESSQDD | 138 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21493109 | 21493861 | - | Sed0007508.1 | Sed01g2682 | 701986 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2682 | 138 | Gene3D | AP2/ERF domain | 23 | 81 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2682 | 138 | PRINTS | Ethylene responsive element binding protein signature | 24 | 35 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2682 | 138 | PRINTS | Ethylene responsive element binding protein signature | 62 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2682 | 138 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed01g2682 | 138 | SUPERFAMILY | DNA-binding domain | 23 | 81 | IPR016177 | GO:0003677(InterPro) | |
Sed01g2682 | 138 | Pfam | AP2 domain | 24 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2682 | 138 | CDD | AP2 | 24 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2682 | 138 | FunFam | Ethylene-responsive transcription factor 2 | 22 | 81 | - | - | |
Sed01g2682 | 138 | SMART | rav1_2 | 23 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2682 | 138 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 10 | 136 | - | - | |
Sed01g2682 | 138 | ProSiteProfiles | AP2/ERF domain profile. | 23 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2682 | Sed-Chr1:21493109 | Sed11g1821 | Sed-Chr11:33024469 | 1.10E-20 | dispersed | |
Sed01g2682 | Sed-Chr1:21493109 | Sed10g0653 | Sed-Chr10:4487343 | 2.30E-36 | wgd | |
Sed01g2682 | Sed-Chr1:21493109 | Sed11g0932 | Sed-Chr11:23467725 | 1.40E-41 | wgd | |
Sed01g2682 | Sed-Chr1:21493109 | Sed13g1770 | Sed-Chr13:22730158 | 1.10E-49 | wgd | |
Sed01g2682 | Sed-Chr1:21493109 | Sed14g0864 | Sed-Chr14:17345118 | 5.10E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37311 | PF00847 | AP2 | 4.30E-12 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2682 | K09286 | - | csv:101204958 | 187.193 |