Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2683 ATGACTAACACAAATTTCATCCCTAATCCTATGAACACTCTCCCATTATTGCCCTCTTCTCAATCGCTATTTCCAAACAACGCCATCAATTTCAAGCACAAAATCTCCATTGCAGCAAAACCCACATTCCAAAGTTCAGTTCCATGCCGAATCCGCGCCACCGCCGAAACCGGAGCTTCATCGGCGTCGATCGACATGGTCAGAAACAGAGAAGGGATTTTCACCGCCAAACAAAGCAAGGTCGTCGTACTCTGGGATCTCGACAACAAACCCCCTCGCGGGCAGCCGTACGAGGCGGCGATGGCGCTGAAACGAGCCGCACAACGCTTCGGACAAGTAGTCGACATGTCGGCCTACGCCAACCGCCACGCCTTCATCCATTTACCCCAATGGGTCGTCGAAGAACGCCGCAACCGTCGGCAACTTAACATTCTCGAGCGCAAAGGGCTATCCACCCCGTTGCCGGAGTCGTACGTTTGTGGGGTTTGCGGTCGGAAGTGCAAAACGAATCTAGATCTGAAGAAGCATTTCAAGCAACTCCACGAACGCGAACGACAGAAGAAACTGAACAGAATGAATTCTCTAAAGGGGAAGAAGCGGCAGCGTTATAAGGAAAGGTTCATATCTGGGAATGATAAGTACAATGAAGCCGCCAGGTCTTTGATTACGCCGAAAGTTGGGTATGGATTGGCGTCGGAATTGAGACGAGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCACAAGCGGCGGATTGGGCTTTGAAGAGGCAGATTCAGCATTCGATGAGTCGTGGGATTGATTGGATGTTTCTTGTTTCTGATGATTCTGATTTCTCTGAGATATTGAGGAAGGCTAATGAGGCTAATTTGGGGACTGTTGTTGTTGGGGATCGTGATGGGGTGTTGGGTAGAAATGCAGATTTATGGGTTCCATGGATGGGGATTGAAAATGGGGATGTTAGAGATGAGGATTTGGTGCCCAGACGATGGAGGATGAGGAAAAACGAAGAGGACTTGAATGAAGATGATGGGTTTTCGGTTTCGAGTTTTTATGGAGAGATTGAAGCTGGTAATGATTTGGAGAGTGTAGTGGAAGAGTTAAATACAGGGTTTAATGGCTTTAGAATCTCTGCATTTTCAGAAGGGGAAGATGATGATGATGAAGAAGATGAATGGATTGAAGAGGATGAAGATATATATTTATGA 1209 47.39 MTNTNFIPNPMNTLPLLPSSQSLFPNNAINFKHKISIAAKPTFQSSVPCRIRATAETGASSASIDMVRNREGIFTAKQSKVVVLWDLDNKPPRGQPYEAAMALKRAAQRFGQVVDMSAYANRHAFIHLPQWVVEERRNRRQLNILERKGLSTPLPESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMNSLKGKKRQRYKERFISGNDKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQIQHSMSRGIDWMFLVSDDSDFSEILRKANEANLGTVVVGDRDGVLGRNADLWVPWMGIENGDVRDEDLVPRRWRMRKNEEDLNEDDGFSVSSFYGEIEAGNDLESVVEELNTGFNGFRISAFSEGEDDDDEEDEWIEEDEDIYL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21506928 21508136 - Sed0026639.1 Sed01g2683 701987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2683 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 186 IPR013087 -
Sed01g2683 402 MobiDBLite consensus disorder prediction 379 402 - -
Sed01g2683 402 ProSitePatterns Zinc finger C2H2 type domain signature. 160 181 IPR013087 -
Sed01g2683 402 Coils Coil 178 198 - -
Sed01g2683 402 CDD PIN_LabA-like 168 298 - -
Sed01g2683 402 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 48 392 - -
Sed01g2683 402 MobiDBLite consensus disorder prediction 382 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2683 Sed-Chr1:21506928 Sed04g0765 Sed-Chr4:6171665 1.70E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37312 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2683 - - - 0.0