Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2685 | ATGCTGACAACTCTCTCTCTCTACGTGGAACTTTCTGATTGGTTTCTGCCTTTGACTACAGAAAGGACCAGAATCGACCACTCAGTTTTGACTCCAATCCTTTCCTTTCCCTTCTTCTTTTCCCCCATTTTACTTTCTTTCTCAAACAACAATATGGCTCTTGAGCTCATCATGGGGTTTGGTGCTTCCAATTTCAGTCCCAACATGAACCAGACCGCCGCTGTTTCCGCCGTTCAAGAAGCCACCACCGCCGGGATTCAAAGCGTCGAGAATTTCCTCAAATTAATGTCTCAATCCCCCAATGGATCCCAAGCCGTAGCCGATTCCGTGGTCACCAAATTCAAAAAGGTCATTTCTTTACTCGACCGCACCCGAACCGGCCACGCCCGGTTCAGAAGAGCTCCGGCCCTACCCAACCCCTCTCCAATTTCACCCCCAAAGATTGAATTAAACAAACAAGAACCGGTCTCTGCTTTCAAGGTTTACTGTCCCAAGCCTTCCTCTGTTCTTCGTCTGCCTCAAAAAAATGGATCCGTAAATACAAATTCGTATTTTTCGTCGCTAACCGGCGACACCGACAGTGGGTTTCAGTTCGCCGGAAAACCCCCAATTTCTTCGTCGTCGTTAAAGAGAAAGTGCAGTTCCGTCGATGATTCCGCCGCGAAGTGCGGCTCTTCCGCCGGCCGGTGTCACTGTTCCAAGAAAAGGAAAAACAGGGCGAAGAGAGTTGTAAGAGTTGCCGCCGTTAGTTCGAAACTCGCCGATATTCCGCCGGACGATTACTCGTGGAGAAAGTACGGCCAGAAACCGATTAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTTTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATTCAACAATGCTGATTGTAACTTACGAAAACGACCACAACCACGCCATCTCCACCGAAACATCTGCACCGCTTGTTCTCGAATCATCATAA | 993 | 48.84 | MLTTLSLYVELSDWFLPLTTERTRIDHSVLTPILSFPFFFSPILLSFSNNNMALELIMGFGASNFSPNMNQTAAVSAVQEATTAGIQSVENFLKLMSQSPNGSQAVADSVVTKFKKVISLLDRTRTGHARFRRAPALPNPSPISPPKIELNKQEPVSAFKVYCPKPSSVLRLPQKNGSVNTNSYFSSLTGDTDSGFQFAGKPPISSSSLKRKCSSVDDSAAKCGSSAGRCHCSKKRKNRAKRVVRVAAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDSTMLIVTYENDHNHAISTETSAPLVLESS | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21514376 | 21516892 | - | Sed0006183.1 | Sed01g2685 | 701989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2685 | 330 | SMART | WRKY_cls | 257 | 317 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed01g2685 | 330 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 76 | 318 | IPR044810 | GO:0003700(InterPro) | |
Sed01g2685 | 330 | Pfam | WRKY DNA -binding domain | 259 | 315 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed01g2685 | 330 | Pfam | Plant zinc cluster domain | 210 | 255 | IPR018872 | - | |
Sed01g2685 | 330 | FunFam | WRKY transcription factor 65 | 241 | 318 | - | - | |
Sed01g2685 | 330 | Gene3D | WRKY domain | 240 | 318 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed01g2685 | 330 | SUPERFAMILY | WRKY DNA-binding domain | 255 | 317 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed01g2685 | 330 | ProSiteProfiles | WRKY domain profile. | 252 | 318 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2685 | Sed-Chr1:21514376 | Sed05g1638 | Sed-Chr5:30297805 | 1.20E-54 | dispersed | |
Sed01g2685 | Sed-Chr1:21514376 | Sed01g2686 | Sed-Chr1:21514376 | 3.00E-183 | tandem | |
Sed01g2685 | Sed-Chr1:21514376 | Sed10g0657 | Sed-Chr10:4510509 | 2.60E-65 | wgd | |
Sed01g2685 | Sed-Chr1:21514376 | Sed13g1775 | Sed-Chr13:22795985 | 7.20E-108 | wgd | |
Sed01g2685 | Sed-Chr1:21514376 | Sed14g0865 | Sed-Chr14:17452343 | 5.20E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37313 | PF03106 | WRKY | 7.80E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2685 | - | - | - | 0.0 |