Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2685 ATGCTGACAACTCTCTCTCTCTACGTGGAACTTTCTGATTGGTTTCTGCCTTTGACTACAGAAAGGACCAGAATCGACCACTCAGTTTTGACTCCAATCCTTTCCTTTCCCTTCTTCTTTTCCCCCATTTTACTTTCTTTCTCAAACAACAATATGGCTCTTGAGCTCATCATGGGGTTTGGTGCTTCCAATTTCAGTCCCAACATGAACCAGACCGCCGCTGTTTCCGCCGTTCAAGAAGCCACCACCGCCGGGATTCAAAGCGTCGAGAATTTCCTCAAATTAATGTCTCAATCCCCCAATGGATCCCAAGCCGTAGCCGATTCCGTGGTCACCAAATTCAAAAAGGTCATTTCTTTACTCGACCGCACCCGAACCGGCCACGCCCGGTTCAGAAGAGCTCCGGCCCTACCCAACCCCTCTCCAATTTCACCCCCAAAGATTGAATTAAACAAACAAGAACCGGTCTCTGCTTTCAAGGTTTACTGTCCCAAGCCTTCCTCTGTTCTTCGTCTGCCTCAAAAAAATGGATCCGTAAATACAAATTCGTATTTTTCGTCGCTAACCGGCGACACCGACAGTGGGTTTCAGTTCGCCGGAAAACCCCCAATTTCTTCGTCGTCGTTAAAGAGAAAGTGCAGTTCCGTCGATGATTCCGCCGCGAAGTGCGGCTCTTCCGCCGGCCGGTGTCACTGTTCCAAGAAAAGGAAAAACAGGGCGAAGAGAGTTGTAAGAGTTGCCGCCGTTAGTTCGAAACTCGCCGATATTCCGCCGGACGATTACTCGTGGAGAAAGTACGGCCAGAAACCGATTAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTTTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATTCAACAATGCTGATTGTAACTTACGAAAACGACCACAACCACGCCATCTCCACCGAAACATCTGCACCGCTTGTTCTCGAATCATCATAA 993 48.84 MLTTLSLYVELSDWFLPLTTERTRIDHSVLTPILSFPFFFSPILLSFSNNNMALELIMGFGASNFSPNMNQTAAVSAVQEATTAGIQSVENFLKLMSQSPNGSQAVADSVVTKFKKVISLLDRTRTGHARFRRAPALPNPSPISPPKIELNKQEPVSAFKVYCPKPSSVLRLPQKNGSVNTNSYFSSLTGDTDSGFQFAGKPPISSSSLKRKCSSVDDSAAKCGSSAGRCHCSKKRKNRAKRVVRVAAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDSTMLIVTYENDHNHAISTETSAPLVLESS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21514376 21516892 - Sed0006183.1 Sed01g2685 701989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2685 330 SMART WRKY_cls 257 317 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2685 330 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 76 318 IPR044810 GO:0003700(InterPro)
Sed01g2685 330 Pfam WRKY DNA -binding domain 259 315 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2685 330 Pfam Plant zinc cluster domain 210 255 IPR018872 -
Sed01g2685 330 FunFam WRKY transcription factor 65 241 318 - -
Sed01g2685 330 Gene3D WRKY domain 240 318 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2685 330 SUPERFAMILY WRKY DNA-binding domain 255 317 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2685 330 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2685 Sed-Chr1:21514376 Sed05g1638 Sed-Chr5:30297805 1.20E-54 dispersed
Sed01g2685 Sed-Chr1:21514376 Sed01g2686 Sed-Chr1:21514376 3.00E-183 tandem
Sed01g2685 Sed-Chr1:21514376 Sed10g0657 Sed-Chr10:4510509 2.60E-65 wgd
Sed01g2685 Sed-Chr1:21514376 Sed13g1775 Sed-Chr13:22795985 7.20E-108 wgd
Sed01g2685 Sed-Chr1:21514376 Sed14g0865 Sed-Chr14:17452343 5.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37313 PF03106 WRKY 7.80E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2685 - - - 0.0