Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2686 ATGCTGACAACTCTCTCTCTCTACGTGGAACTTTCTGATTGGTTTCTGCCTTTGACTACAGAAAGGACCAGAATCGACCACTCAGTTTTGACTCCAATCCTTTCCTTTCCCTTCTTCTTTTCCCCCATTTTACTTTCTTTCTCAAACAACAATATGGCTCTTGAGCTCATCATGGGGTTTGGTGCTTCCAATTTCAGTCCCAACATGAACCAGACCGCCGCTGTTTCCGCCGTTCAAGAAGCCACCACCGCCGGGATTCAAAGCGTCGAGAATTTCCTCAAATTAATGTCTCAATCCCCCAATGGATCCCAAGCCGTAGCCGATTCCGTGGTCACCAAATTCAAAAAGGTCATTTCTTTACTCGACCGCACCCGAACCGGCCACGCCCGGTTCAGAAGAGCTCCGGCCCTACCCAACCCCTCTCCAATTTCACCCCCAAAGATTGAATTAAACAAACAAGAACCGGTCTCTGCTTTCAAGGTTTACTGTCCCAAGCCTTCCTCTGTTCTTCGTCTGCCTCAAAAAAATGGATCCGTAAATACAAATTCGTATTTTTCGTCGCTAACCGGCGACACCGACAGTGGGTTTCAGTTCGCCGGAAAACCCCCAATTTCTTCGTCGTCGTTAAAGAGAAAGTGCAGTTCCGTCGATGATTCCGCCGCGAAGTGCGGCTCTTCCGCCGGCCGGTGTCACTGTTCCAAGAAAAGCAGGAAAAACAGGGCGAAGAGAGTTGTAAGAGTTGCCGCCGTTAGTTCGAAACTCGCCGATATTCCGCCGGACGATTACTCGTGGAGAAAGTACGGCCAGAAACCGATTAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTTTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATTCAACAATGCTGATTGTAACTTACGAAAACGACCACAACCACGCCATCTCCACCGAAACATCTGCACCGCTTGTTCTCGAATCATCATAA 996 48.9 MLTTLSLYVELSDWFLPLTTERTRIDHSVLTPILSFPFFFSPILLSFSNNNMALELIMGFGASNFSPNMNQTAAVSAVQEATTAGIQSVENFLKLMSQSPNGSQAVADSVVTKFKKVISLLDRTRTGHARFRRAPALPNPSPISPPKIELNKQEPVSAFKVYCPKPSSVLRLPQKNGSVNTNSYFSSLTGDTDSGFQFAGKPPISSSSLKRKCSSVDDSAAKCGSSAGRCHCSKKSRKNRAKRVVRVAAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDSTMLIVTYENDHNHAISTETSAPLVLESS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21514376 21516892 - Sed0006183.2 Sed01g2686 701990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2686 331 Pfam WRKY DNA -binding domain 260 316 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2686 331 FunFam WRKY transcription factor 65 242 319 - -
Sed01g2686 331 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 76 319 IPR044810 GO:0003700(InterPro)
Sed01g2686 331 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2686 331 SUPERFAMILY WRKY DNA-binding domain 256 318 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2686 331 Pfam Plant zinc cluster domain 210 256 IPR018872 -
Sed01g2686 331 Gene3D WRKY domain 243 319 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2686 331 SMART WRKY_cls 258 318 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2686 Sed-Chr1:21514376 Sed13g1775 Sed-Chr13:22795985 1.30E-109 dispersed
Sed01g2685 Sed-Chr1:21514376 Sed01g2686 Sed-Chr1:21514376 3.00E-183 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37314 PF03106 WRKY 7.90E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2686 - - - 0.0