Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2687 ATGGAAACCTACAAATACAAATCCTCGCCGATTATTGCCTTCCTCCTCTTCCTCACAATAACTACTACATCATCGGCGTTGGAATCTCCGATCATCCCGGCGAGGACGGACGATGAAGTGACGGCGCTGTACGACGACTGGCGCGCCAAGCACGGCAAGTTGCAAAACGGCTTGGATGATCGATTCCAGATATTTAAAGACAATCTCAAATACATCGACGAAATCAACGCCCTAGATTTGCCCTACCGGTTGGGGTTGAATGTTTTCGCAGATCTGACGAACGAGGAGTACCGGTCCAGGAATTTGGGAACCAAGTTCGCGGCCGGTTCGAGGCGGAACAAGACCAGCAGCCGGTATCTGCCTCGGCTTGGGGATGAGCTGCCCGGCTCGGTCGATTGGCGGGAGAAAGGCGCCGTCGCTCCCGTTAAAAACCAGCAGAGTTGTGGGAGTTGCTGGGCGTTCTCAACTATAGCAGCTGTGGAAGGCATAAACCAGATTGTTACAGGCGACTTCATAGCCTTATCAGAACAGGAGCTGGTGGATTGTGACACTACTTATAACGAAGGTTGCAATGGAGGGTTAATGGACTATGCTTTTGAATTCATCATCAACAATGGCGGCATTGACACTGAAGATGATTATCCTTACAAAGGTTTTGATAGCACCTGCATCCAATATAAGACCTCCCTGTTAACAATGAGAAAGCACTTCAAAAAGCAACCAGCTAAACAGGTTGTGGCTGTTGCCATTCAAGGAGGTGGTAGAAGTTTCCAGCTATATCATTCGGGTATATTCACAAGAATATGTGGAACAGAATTAGACCATGGTGTTAACGTGGTTGGCTACGGGTCAGAAGGGGGCATTGATTACTGGATTGTAAGAAACTCATGGGGAGCAAGTTGGGGCAAACATGGCTACATCAGGATGCAACGCAACGTGGGTTCATCAAAAGGTCTATGTGGGATTGCAATGCAGCCTTCCTACCCCATTAAAAACGGACCAAACCCTCCAAATCCCGGCCCAACTCCTCCGAGTCCGGTGAAGCCGCCTTCGGTATGCGATGAATATTATACCTGTCCTGCATCTAAAACTTGCTGCTGCATTTTTGAGTTCTCAAAGTTGTGCTTTCAATGGGGATGCTGCCCTCTTGAAAGCGCCACATGTTGTGATGATCATGAGAGCTGCTGCCCCCATGAGTACCCTATCTGTAACGTCTGTGCTGGAACTTGCTTGAAGGGAAAGAACGATGGTTTTGGAGTGAAGGCGATGAGGCGCAGTGTAGCTGCAGCTAAACCATCGTGGGCATTTGGAGATACGACTATCGGAAAGAGTAGTGCTTAA 1341 48.77 METYKYKSSPIIAFLLFLTITTTSSALESPIIPARTDDEVTALYDDWRAKHGKLQNGLDDRFQIFKDNLKYIDEINALDLPYRLGLNVFADLTNEEYRSRNLGTKFAAGSRRNKTSSRYLPRLGDELPGSVDWREKGAVAPVKNQQSCGSCWAFSTIAAVEGINQIVTGDFIALSEQELVDCDTTYNEGCNGGLMDYAFEFIINNGGIDTEDDYPYKGFDSTCIQYKTSLLTMRKHFKKQPAKQVVAVAIQGGGRSFQLYHSGIFTRICGTELDHGVNVVGYGSEGGIDYWIVRNSWGASWGKHGYIRMQRNVGSSKGLCGIAMQPSYPIKNGPNPPNPGPTPPSPVKPPSVCDEYYTCPASKTCCCIFEFSKLCFQWGCCPLESATCCDDHESCCPHEYPICNVCAGTCLKGKNDGFGVKAMRRSVAAAKPSWAFGDTTIGKSSA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21522886 21527626 + Sed0013090.1 Sed01g2687 701991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2687 446 FunFam Cysteine protease 1 350 413 - -
Sed01g2687 446 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Sed01g2687 446 Pfam Cathepsin propeptide inhibitor domain (I29) 44 97 IPR013201 -
Sed01g2687 446 Pfam Papain family cysteine protease 127 330 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed01g2687 446 SMART Inhibitor_I29_2 44 97 IPR013201 -
Sed01g2687 446 CDD Peptidase_C1A 128 329 IPR039417 -
Sed01g2687 446 SMART pept_c1 127 330 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed01g2687 446 Gene3D Cysteine proteinases 21 332 - -
Sed01g2687 446 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 273 283 IPR025660 -
Sed01g2687 446 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 37 327 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Sed01g2687 446 PRINTS Papain cysteine protease (C1) family signature 275 285 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed01g2687 446 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed01g2687 446 PRINTS Papain cysteine protease (C1) family signature 290 296 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed01g2687 446 SMART GRAN_2 353 410 IPR000118 -
Sed01g2687 446 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 290 309 IPR025661 -
Sed01g2687 446 FunFam Cysteine protease 1 25 332 - -
Sed01g2687 446 SUPERFAMILY Granulin repeat 350 384 - -
Sed01g2687 446 Gene3D Granulin 350 413 IPR037277 -
Sed01g2687 446 Pfam Granulin 364 411 IPR000118 -
Sed01g2687 446 SUPERFAMILY Cysteine proteinases 36 330 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2687 K25900 - - csv:101217590 692.575
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2687 Sed-Chr1:21522886 Sed10g1996 Sed-Chr10:36572322 2.50E-124 dispersed
Sed01g2687 Sed-Chr1:21522886 Sed10g0660 Sed-Chr10:4540279 2.50E-103 wgd
Sed01g2687 Sed-Chr1:21522886 Sed13g1776 Sed-Chr13:22819737 2.90E-184 wgd
Sed01g2687 Sed-Chr1:21522886 Sed14g0867 Sed-Chr14:17527232 5.70E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33