Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2708 ATGAGTTGCAATGGTTGCAGGGTTCTTCGAAAGGGTTGCAGCGAAGACTGTGTATTAAGGTCAAGTCTCCAATGGATTCACTCCCCGGAAGCTCAAGGCAACGCCACTTTATTTCTCGCTAAGTTCTTCGGCCGGAGTGATCTCTTGTCCTTCCTCTCCTCCGTTCCTAATCATCAAAGACATGCTCTGTTTCAGTCTCTGTTATTTGAAGCCTGTGGCCGCACGGTGAACCCGGTGAGCGGCGCCGTTGGGCTGTTGTCGAGTGGGAACTGGCACGCGTGTCGGGCGGCGGCGGAGACGGTTCTCAGCGGCGGAGTTCTCTGGCCGATTCCCGGAATTCAAATTTCTGGGAATCTCTCTGTTAACGTCGAGGATGCTTCTCTTAGTTTCAATAATGATGTTTGGACCCATCAGAATCTTCCGGCCGATCACGGAAGAGGGAAGGAACAGCCGTTGGAGAATCAGCGGTCGTTTGATTCAGAGGAATCGGTGATGACGAGCTTTGGAAGCGGCGATCATGGCGTCGGCGACCGGAAGCTTTTGAACTTGTTCATCTGA 558 52.69 MSCNGCRVLRKGCSEDCVLRSSLQWIHSPEAQGNATLFLAKFFGRSDLLSFLSSVPNHQRHALFQSLLFEACGRTVNPVSGAVGLLSSGNWHACRAAAETVLSGGVLWPIPGIQISGNLSVNVEDASLSFNNDVWTHQNLPADHGRGKEQPLENQRSFDSEESVMTSFGSGDHGVGDRKLLNLFI 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21710980 21711980 - Sed0018191.1 Sed01g2708 702012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2708 185 MobiDBLite consensus disorder prediction 142 156 - -
Sed01g2708 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 127 - GO:0010468(PANTHER)
Sed01g2708 185 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Sed01g2708 185 MobiDBLite consensus disorder prediction 139 170 - -
Sed01g2708 185 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2708 Sed-Chr1:21710980 Sed10g0704 Sed-Chr10:4931641 1.20E-43 dispersed
Sed01g2708 Sed-Chr1:21710980 Sed14g0907 Sed-Chr14:18051836 1.10E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37316 PF03195 LOB 1.60E-24 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2708 - - - 0.0