Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2711 ATGGCTCTTCAAGCACTCAATTCTCCCACCACCCCCTCGCCGGCGCTCCTCTACGACGACCCAACCCTCAATTCCACCGAGTCATGGTCCAAGCGCAAGCGAACCAAGCGTCCACGCGGGCTGGACGTCGCCCCAACCGAGGAAGAGTATTTGGCGCTATGTCTAATCATGCTCGCCCGCGGCGGCGCCACCCACTCTGAGACCCCGATTCCGGCTCACCCCATCTCCGTCGTTAAGCTTTCCTACAAGTGCTCTGTTTGCGACAAGGCCTTTTCGTCTTACCAAGCCTTGGGCGGACACAAGGCTTCCCATCGGAAATCCGCTACAGGGGAATTAGATCACTCCACTTCCTCCACCATCACCACCACCACCACTTCCGCCGCCGCTCTCGGCGGTGCTAAATCCCATGAGTGCTCGATTTGCCACAAGTCTTTTCCCTCCGGCCAGGCCTTGGGCGGTCACAAGCGCTGCCACTACGACGGCGGAATTGGTCATAAAAACAACAACCCCGCCGTGACTTCGTCGGAAGGAGTCGGGTCCACCCACAGCCACAGCCACAGCCACCGCGACTTTGACCTTAATCTCCCGGCGTTTCCGGAGCTTTCACCGGGATTCTTCTTCTCCGCCGGCGACGAGGAGGTTCAAAGTCCGTTGCCGTGGAAGAAGCCTCGCGTCTTAACGGTTCCCAAAGTTGAAATTTCTCAAAATTAA 711 57.95 MALQALNSPTTPSPALLYDDPTLNSTESWSKRKRTKRPRGLDVAPTEEEYLALCLIMLARGGATHSETPIPAHPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGELDHSTSSTITTTTTSAAALGGAKSHECSICHKSFPSGQALGGHKRCHYDGGIGHKNNNPAVTSSEGVGSTHSHSHSHRDFDLNLPAFPELSPGFFFSAGDEEVQSPLPWKKPRVLTVPKVEISQN 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21728161 21729340 - Sed0025984.1 Sed01g2711 702015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2711 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Sed01g2711 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 170 IPR013087 -
Sed01g2711 236 MobiDBLite consensus disorder prediction 1 42 - -
Sed01g2711 236 Pfam C2H2-type zinc finger 136 160 IPR013087 -
Sed01g2711 236 Pfam C2H2-type zinc finger 82 107 IPR013087 -
Sed01g2711 236 Gene3D Classic Zinc Finger 80 158 - -
Sed01g2711 236 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Sed01g2711 236 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 10 199 IPR044653 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed01g2711 236 SUPERFAMILY beta-beta-alpha zinc fingers 82 158 IPR036236 -
Sed01g2711 236 SMART c2h2final6 136 158 IPR013087 -
Sed01g2711 236 SMART c2h2final6 82 104 IPR013087 -
Sed01g2711 236 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Sed01g2711 236 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g2711 236 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2711 Sed-Chr1:21728161 Sed06g2022 Sed-Chr6:44338313 3.50E-16 dispersed
Sed05g2624 Sed-Chr5:37855984 Sed01g2711 Sed-Chr1:21728161 1.20E-38 transposed
Sed01g2711 Sed-Chr1:21728161 Sed10g1208 Sed-Chr10:24513221 7.50E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37317 PF13912 zf-C2H2_6 9.10E-13 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2711 - - - 0.0