Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2711 | ATGGCTCTTCAAGCACTCAATTCTCCCACCACCCCCTCGCCGGCGCTCCTCTACGACGACCCAACCCTCAATTCCACCGAGTCATGGTCCAAGCGCAAGCGAACCAAGCGTCCACGCGGGCTGGACGTCGCCCCAACCGAGGAAGAGTATTTGGCGCTATGTCTAATCATGCTCGCCCGCGGCGGCGCCACCCACTCTGAGACCCCGATTCCGGCTCACCCCATCTCCGTCGTTAAGCTTTCCTACAAGTGCTCTGTTTGCGACAAGGCCTTTTCGTCTTACCAAGCCTTGGGCGGACACAAGGCTTCCCATCGGAAATCCGCTACAGGGGAATTAGATCACTCCACTTCCTCCACCATCACCACCACCACCACTTCCGCCGCCGCTCTCGGCGGTGCTAAATCCCATGAGTGCTCGATTTGCCACAAGTCTTTTCCCTCCGGCCAGGCCTTGGGCGGTCACAAGCGCTGCCACTACGACGGCGGAATTGGTCATAAAAACAACAACCCCGCCGTGACTTCGTCGGAAGGAGTCGGGTCCACCCACAGCCACAGCCACAGCCACCGCGACTTTGACCTTAATCTCCCGGCGTTTCCGGAGCTTTCACCGGGATTCTTCTTCTCCGCCGGCGACGAGGAGGTTCAAAGTCCGTTGCCGTGGAAGAAGCCTCGCGTCTTAACGGTTCCCAAAGTTGAAATTTCTCAAAATTAA | 711 | 57.95 | MALQALNSPTTPSPALLYDDPTLNSTESWSKRKRTKRPRGLDVAPTEEEYLALCLIMLARGGATHSETPIPAHPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGELDHSTSSTITTTTTSAAALGGAKSHECSICHKSFPSGQALGGHKRCHYDGGIGHKNNNPAVTSSEGVGSTHSHSHSHRDFDLNLPAFPELSPGFFFSAGDEEVQSPLPWKKPRVLTVPKVEISQN | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21728161 | 21729340 | - | Sed0025984.1 | Sed01g2711 | 702015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2711 | 236 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 82 | 109 | IPR013087 | - | |
Sed01g2711 | 236 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 170 | IPR013087 | - | |
Sed01g2711 | 236 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Sed01g2711 | 236 | Pfam | C2H2-type zinc finger | 136 | 160 | IPR013087 | - | |
Sed01g2711 | 236 | Pfam | C2H2-type zinc finger | 82 | 107 | IPR013087 | - | |
Sed01g2711 | 236 | Gene3D | Classic Zinc Finger | 80 | 158 | - | - | |
Sed01g2711 | 236 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 84 | 104 | IPR013087 | - | |
Sed01g2711 | 236 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 10 | 199 | IPR044653 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Sed01g2711 | 236 | SUPERFAMILY | beta-beta-alpha zinc fingers | 82 | 158 | IPR036236 | - | |
Sed01g2711 | 236 | SMART | c2h2final6 | 136 | 158 | IPR013087 | - | |
Sed01g2711 | 236 | SMART | c2h2final6 | 82 | 104 | IPR013087 | - | |
Sed01g2711 | 236 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 158 | IPR013087 | - | |
Sed01g2711 | 236 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed01g2711 | 236 | MobiDBLite | consensus disorder prediction | 168 | 191 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2711 | Sed-Chr1:21728161 | Sed06g2022 | Sed-Chr6:44338313 | 3.50E-16 | dispersed | |
Sed05g2624 | Sed-Chr5:37855984 | Sed01g2711 | Sed-Chr1:21728161 | 1.20E-38 | transposed | |
Sed01g2711 | Sed-Chr1:21728161 | Sed10g1208 | Sed-Chr10:24513221 | 7.50E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37317 | PF13912 | zf-C2H2_6 | 9.10E-13 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2711 | - | - | - | 0.0 |