Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2712 ATGGCCACGACGGAGCAGCCTCTCAAGAAGCGCCGGAACTACGGACCATCCGCATCAGAACCACCACCGCCGGACCAGAAAACGGCCTCTCCGCCGCCGCCTACTCCACCGCAGCCCTCCCAATCCGAAATCCTCCAAAGGAGGAGGAACAGAGATGACATTAGAAACGTCTATGAATGTTTCAAGCGAATTAGGTTTGTCCTTTCGCAGACAGAGAACGGCTCTTTCACTCCCGATATCGAGCAGGCATATCTTTCTCTCATCACTGCTTCTAGAGGGTGCACCAGTGTGCAGCGTATTGTGGCTGACTTTATTCCACGATATGCACCTTATTGTCCTACTGCTCTCGAAGCTGCATCCAAAGTTATTGTCAATATGCACAATCAGAGCTTGGAAATTATAAATAACGGCGAGGATTTTGATAATGTTGCGTTTGAGACAGCCAGGGCTTGTATTATTGGTTTGGTTGATATTTGTGCTGCTGCAATTTCTAAGGCACATACGTCCTCTGTCATTAGAGGCATTTGCTATGCAGTCTTTCAGAATGTTTTCACCTTTTTCGTGTCATCTTTAGAGGGTAAAGATATCTTTCGGATTGTTGATGAAGAAGCTCTTAAAATTCAAGATTCTGCAGATGTTTTTTCTGAGTTAAAGCAGAAATATGCTGATGAAAATAGTTTGCCTGTGATTAAGCTATCCAAGTTACGTGCCATCAGTTTCCTCTGGCTGTTTTTTCATTACCCCAAAAACTTAGCTGCAGCTTGTTTCGAGCTTTTCAATATGTCTGCCGAGGTAGTTCACAAGGATGGGCTGTATTTTCTAACGCAGATTATATTTGGACTCGGTGACAACATCACCCGTAATTTGGATAACGGAAATGACAATAGCCCCAAATGCTGCAATGATGGTGTTAAGGAGCAGGTTTTAGTCGGTGGCCACATCTCTGTTGATGCGGCATCCGTTTCAAGAAATTGTATCTTGAGCTTGGTTCTTGGAAAAGATCAATCATTTCGAAATTGGATGTTTACACAGTATAAGAGGCTCTGTGACATGCCGTCCTTTAGAGCCTTAGAAAATGTAAAATCTGCTTTGGAAGAAATTTTTGAATCATTTCCTGAGTTAATGAACAATGAAGACAGTCAAGGGAATATTGATGAGGAAATTTCTGATTCGTTGAAGCATTCTAAGCGTAGTAGGTGTGCAATTTCCATGGAACTATCTGATAAAAAGAGAAAAATGAGACATTGTGATTTCCTTGAAGATGGTGTCAATGACACAGTTTCTGGTCAACATCGTTTGTCAATTTCTCTTGATGGAAAACACACAGCGTGTTCTGATTTTGATACCGGTGGCTTGAGACCCATGGCTTTTGAAGTTCGGGAGCCTGGAGGTTTGGTACATGGTAGTTTGCCCCAGTTGCAGGATTCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCATTAGACCTGCAGAGCAATTCTTTTGAATGTGCAAAACATTCAGTTGATGGGAATCAAGTTTCAAGTGCTGATCGCAACTTTCCTGTTCGGAGATTGTCTGCTGGAGATATCAATAATGATCCTGTGCCTCATAGACATCAACAATTAGCGCAATGTAGTTCTACAACTTCTCAAAGTTTGTGGTTTTCTGATGGAGATCTCTCAGCCATGGAAATCTTTTCTGCCACTAAACAGTTATGGGTGGGTCTTTTAGGTCCTGATGTATCTGAAGCTCACATAAGGTATCAATTTGAGAGGTTTGGCTACATTGAACATTTTTTCTTCTTCCCAATAAAAGGGTTTGCAGTAGTGGAGTATGGTCACATCATTGATGCCGTAAGGGCACGCGAGTATATGCGTGGACAATTTCATTGGTGTGTAAAATTCATGGATATTGGTTTAGGGACTAGGGGTTCCTCCCATGGGGTTGCAATTGGTTACAGTGTGCATGTCTATGTTGGAAATGTTTTAAGCCACTGGGTGAAGGATGAGATTCTGCATGAGACAAGGAAAGTGCTCAACAAGTTTCCATACATGGTGTCTGATCTTATTAGCAGTGAGGGAGCATTGCTGATGGAGTTTGAGTCTCCCGAAGAAGCTGCAGAAGTAATGACACATCTCAGACAACACCGAAGGGAAAAGACCCTTCCCTGGCCACCTTCAAATGCAGGACAAACTAACATCACTGTGCCTTATTTAGATAGTGGAAGATCTTCTTGTACCAGTACTAGCATCAGAACTAACAATCCTACGAACTTGCCCAGTAGTATGGTTGAGTCGCCTAATGCTCCAATTGTCCCAGAGAGTCCTAACTTCAGGACAAGAATGTCAGACCTTTCTTCCTTCCTCTACACACTGCGTTCAAAATACAACATCAATCAAAACTCGAGTTATTTTGAAAGCTATATGTCTGGAGGTTGTAATACTTCCATGAGGGAAGAAGACAGAACTCCTACTAGCACTCTCTGGGTTTCTTTTCCAAATTTTAGTTCTCCTTTTGTCACTGATGAGGAACTAATGAAGATCTGTAACCTTGCCGTCACCAATACTGGGTCTGTTGTCAGGATGACTCGTCCAAGTGTACAAGTGGGCGGTGGTTGGCTTGTTGAATGCAGTAGTGTAGATGCAGCAATCACCATCTTGAAGAACCTCCGTGGTTGTCCTGGAATTTTCCTTCGAATAGAATTCAGTAAACCAGGATGGTTCCATACAACACCTTTTTTGAGGAACCACGACACTTGTGCTATGGAGCATCCATCTCCTAGAGTATTACATGAGAATCGTGCCATACCTCAGCAAGGTGGATATTCATATCAGCCAAACTGGGCTCCTTCTGGTCATACAGAGATGCCTGAAATAGGGGTTAGAAAGACTGATGCTTACGAAAATAACATGCTGATAGATCATCCCCAAGGTGGTCACATAGTGTCTGGAAGTATTCCATGCTTGCCCATATCAACAATGGGGCCTCCTGCTCCACCACCTCCACCGCAGATTCAGCTGCCTCCATTCGTTCAATCTCCATACCCTCCAAATAGTTCTTGGGATCCAAGGGGTTTAAACCATCCTATGCCTTTAAATCCAATATCACCGAGCATTATGCCTAATACTTTTCCGGGTAATTCTGTTGCATGCCCTCCTTTCTTACCTGCTTCTGTGACACCTCTTGCTCAGATGCAAGGAACTCCCATGCAGCAGCAGCATCTAGACCATGTTTTTCCTCATCCTGTTCCTCCACCATCAATATCATCTCTTCCCCCTCCCCAGCCCAAGATGCCGCCTCCCATGCATCCATCTCCACCACCATTGCCTCACTCACAACCACCTAATATTCCTCCTCCTCCCTGTTCTCCTCCACCCCCACCGCCAGCTACTACGACAGGAGCCAGCGAAGGGGAAAGTTGTAGCCAGCCTGTCCAGTACCATTGGCAAGGAGCACTGTGTAAAAGCGGGGTTCAGTACTGTACAATTTTTGCAAAAAGAGTGGATTCACATGCTTGCGAATATTTGAATGCTAGTCCAGAACCTATCGAGTGGCCAGCAAAATTAGATATGACCAAACGCACAGATTTTAAGCATGTGAAGTCGACATTCTCTGGCTCTTCTCCAAATAAAAGGGAAATATGTCAGCTGATCCCATCTTCTGTTGGAGACCATAAAGGCTTTCAAGATTTTGTATCATATTTGAAGCAGAGGGATTGTGCTGGAGTAATAAAGATACCGGCCACGAAATCGCTATGGACAAGACTTCTCTTTATACTTCCATATTCGCAAGACTCGTGTTCTCTGCTCTCAATTCCACCAGGTCCACCAGATAGCCTCATTGCCTTGGTTCTTCCCAAAGAAACAAACTTCGAATGGGTTTGA 3873 43.84 MATTEQPLKKRRNYGPSASEPPPPDQKTASPPPPTPPQPSQSEILQRRRNRDDIRNVYECFKRIRFVLSQTENGSFTPDIEQAYLSLITASRGCTSVQRIVADFIPRYAPYCPTALEAASKVIVNMHNQSLEIINNGEDFDNVAFETARACIIGLVDICAAAISKAHTSSVIRGICYAVFQNVFTFFVSSLEGKDIFRIVDEEALKIQDSADVFSELKQKYADENSLPVIKLSKLRAISFLWLFFHYPKNLAAACFELFNMSAEVVHKDGLYFLTQIIFGLGDNITRNLDNGNDNSPKCCNDGVKEQVLVGGHISVDAASVSRNCILSLVLGKDQSFRNWMFTQYKRLCDMPSFRALENVKSALEEIFESFPELMNNEDSQGNIDEEISDSLKHSKRSRCAISMELSDKKRKMRHCDFLEDGVNDTVSGQHRLSISLDGKHTACSDFDTGGLRPMAFEVREPGGLVHGSLPQLQDSLSKHDHLSYAKTSLDLQSNSFECAKHSVDGNQVSSADRNFPVRRLSAGDINNDPVPHRHQQLAQCSSTTSQSLWFSDGDLSAMEIFSATKQLWVGLLGPDVSEAHIRYQFERFGYIEHFFFFPIKGFAVVEYGHIIDAVRAREYMRGQFHWCVKFMDIGLGTRGSSHGVAIGYSVHVYVGNVLSHWVKDEILHETRKVLNKFPYMVSDLISSEGALLMEFESPEEAAEVMTHLRQHRREKTLPWPPSNAGQTNITVPYLDSGRSSCTSTSIRTNNPTNLPSSMVESPNAPIVPESPNFRTRMSDLSSFLYTLRSKYNINQNSSYFESYMSGGCNTSMREEDRTPTSTLWVSFPNFSSPFVTDEELMKICNLAVTNTGSVVRMTRPSVQVGGGWLVECSSVDAAITILKNLRGCPGIFLRIEFSKPGWFHTTPFLRNHDTCAMEHPSPRVLHENRAIPQQGGYSYQPNWAPSGHTEMPEIGVRKTDAYENNMLIDHPQGGHIVSGSIPCLPISTMGPPAPPPPPQIQLPPFVQSPYPPNSSWDPRGLNHPMPLNPISPSIMPNTFPGNSVACPPFLPASVTPLAQMQGTPMQQQHLDHVFPHPVPPPSISSLPPPQPKMPPPMHPSPPPLPHSQPPNIPPPPCSPPPPPPATTTGASEGESCSQPVQYHWQGALCKSGVQYCTIFAKRVDSHACEYLNASPEPIEWPAKLDMTKRTDFKHVKSTFSGSSPNKREICQLIPSSVGDHKGFQDFVSYLKQRDCAGVIKIPATKSLWTRLLFILPYSQDSCSLLSIPPGPPDSLIALVLPKETNFEWV 1290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21769741 21777155 + Sed0027780.1 Sed01g2712 702016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2712 1290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 566 624 IPR000504 GO:0003723(InterPro)
Sed01g2712 1290 MobiDBLite consensus disorder prediction 741 761 - -
Sed01g2712 1290 CDD RRM_SF 568 625 - -
Sed01g2712 1290 MobiDBLite consensus disorder prediction 741 773 - -
Sed01g2712 1290 MobiDBLite consensus disorder prediction 1063 1137 - -
Sed01g2712 1290 Pfam SPOC domain 1140 1281 IPR012921 -
Sed01g2712 1290 MobiDBLite consensus disorder prediction 990 1025 - -
Sed01g2712 1290 Gene3D - 557 642 IPR012677 -
Sed01g2712 1290 MobiDBLite consensus disorder prediction 17 40 - -
Sed01g2712 1290 CDD SPOC_FPA-like 1145 1282 - -
Sed01g2712 1290 MobiDBLite consensus disorder prediction 990 1012 - -
Sed01g2712 1290 Pfam RNA recognition motif 568 624 IPR000504 GO:0003723(InterPro)
Sed01g2712 1290 SUPERFAMILY RNA-binding domain, RBD 555 625 IPR035979 GO:0003676(InterPro)
Sed01g2712 1290 MobiDBLite consensus disorder prediction 1 49 - -
Sed01g2712 1290 MobiDBLite consensus disorder prediction 1075 1128 - -
Sed01g2712 1290 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 50 1247 IPR052586 GO:0043130(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2712 K18667 - - csv:101209442 1708.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59