Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2728 ATGGTTGATTTTTTTCGAAATTCTTCAATTGAATGGAAGCCCTCTCCTGTGGTAGCGCTAGCCTCCAGCGCCGATGTTTCGCAGGTCGCAGCTGCCAGAGAGGACGGATCGCTTGAGATTTGGCTCGTGTCTCCGGGTTCCGTCGGGTGGCACTGTCAGCTGACGATTAGTGGAGATCCTGCTTCTAGGGTTTCGTCGCTTGTCTGGTGCTGTGCTGGTTCTAGAGATAGCCCTTCTGGTCGCTTGTTTTCGTCCAGCATTGATGGTTCGATTTCGGAGTGGGATTTGTTTGATTTAACGCGGAAGACTGTTTTAGAATCAATTGGTGTCTCTATCTGGCAAATGGCTGCAGCACCTGAAGCTGGCAAGGACTTAGAGTCCCACGATATAGAAAATGGCCACATAACTGACAATGAGAGTGATTGTCAAGATTCTAGTGAAAGTGAAGATGATAGTAACTCATTTGAGCATAATGCCCAATCTCGTGATAAGAATCCCTCCATAGCTGTTGCTTGTGATGATGGATGTGTGCGTATTTATAATATATGCGACACGGAAGAGTTTATTTACAAAAGATCGTTGCCTAGGGTCAGTGGTAGGGTTTTAAGTGTAACATGGAGCAATGATGCAGACCGGATATTTTCAGGGAGCAGTGATGGATTTATTCGATGCTGGAATGCAAGTCTTGGGCATGAGATCTATAGGATAACTGCAGGTCTTGGAGGGTTGGGCAGTGGACCAGAACTTTGTGTATGGTCTTTACTTTCCCTTAGGTGTGGTACCCTTGTCAGTGCAGATAGTACTGGCAGTGTGCAGTTTTGGGATAGTAGTCATGGAACTCTTTTGCAAGCACATACCTTTCACAAGGGTGATGTGAATGCTCTTGCAGCAACTCCTAATCACAATCGAATTTATTCTGCTGGCTCTGATGGTCAGGTTGTTCTCTACAAGCTCTCTAATGAGAATGTTGCATCTAGTGAAGACAAGTGTTCTTCTGAAGTGATGAAAAAATGGATTTATGTTGGTCATGTGAGGGCTCATACTCATGATATCAAGGCTTTGACTGTTGCAGTACCAATTTGTCAAGAAGAACTGTCTCAAGATGAAGAGGTAAAAAGAGTCCGTTATAAGAAGAAGCCAAATGATTTTAGCTATCGTAAGTGGGCCCATTTGGGAGTTCCAATGCTTATCTCAGGTGGTGATGATACGAAGCTTTTTGCATACTCTGCTCAAGAATTTACTAAATTTTCTCCCCATGATATATGTCCTGCACCGCAAAGGGTGCCTATGCAACTCGTACTTAATACAGTTTTCAACCAAGCACCATTATTACTTGTTCAGGCTGCGCACTCTCTGGACATCTTATGTATTCGCGCAAAAAGCAATTCTTTTAGAGATATGGCTTGTGGCCCTTCTAAGGGATTTGCAAAGACAGATTTGTTGGTTAGAGTTAAGAGCAGGGCATCTCGAAAGATTATCTGTAGTACTATTTCCAACTCTGGGAAGCTATTTGCATATTCTGATCATGCCAAACCCAGCCTATTTGAATTGAAGAAATCTGGAGGAAGCAAATGTTCATGGACCGTTAATAGAAGGCAACTTCCAAATATACTACCGTTTGCTCATTCTATGGTCTTCAGTTATGATTCTTCTCGATTAATCATAGCAGGGCATGATAAAAGGATATATGTTGTAGATGTGGGCAGTTTGGAAGTGATTCATTGTTTTATGCCCTTCAGGGAGCTGCAGGATGATTCATTGCCACCTGCTGAACCTCCTATAACGAAAATATTTCCGAGTTCAGATGGGCAGTGGTTAGCTGCAGTCAACTGCTTTGGAGATATATACATATTCAACATGGAGATAATGAGGCAACACTGGTTTATTTCAAGACTAGATGGTGCCTCAATTACGGCTGGAGGTTTTCCTCAATGGAACAATAATGTGCTTGTAGTCACTACTTCTTCAAATCAGGTTTATGCCTTCGATGTTGAGGCCAAACAATTAGGAGACTGGTCAATGCGGCATACACAAGCTCTCCCAAAGAGATTCCAAGAATTTCCTGGGGAGGTTATTGGCCTCTCCTTTCCACCATCTGCCACTTCTATGCCTGTTATCGTATATAGCTCCAGGGCAATGTGCTTAATCGATTTTAGGATGTCGGTGGATCAAGATGAAGAGTATGTCATGATAAGTGGACAAGATTCAACAGTGAAGAGTTTAAAGGGCACTCCAATAATAAATGGGAAATTGAAACGTAAGTTGAGAGACTGCCAAACAGAGGGCAGACTACATGGTAGAAAGAATTTTGAAATTTTTCCTTTAAGAGACCCTGTTTTACTAATTGGACACCTCTCAAAATCCTCACTCTTGATTATAGAAAAACCTTGGTTAGAAGTGGCCAACACTTTCGAAGCCACACCTGTGCACAGACATGTATATGGGACTTGA 2451 42.68 MVDFFRNSSIEWKPSPVVALASSADVSQVAAAREDGSLEIWLVSPGSVGWHCQLTISGDPASRVSSLVWCCAGSRDSPSGRLFSSSIDGSISEWDLFDLTRKTVLESIGVSIWQMAAAPEAGKDLESHDIENGHITDNESDCQDSSESEDDSNSFEHNAQSRDKNPSIAVACDDGCVRIYNICDTEEFIYKRSLPRVSGRVLSVTWSNDADRIFSGSSDGFIRCWNASLGHEIYRITAGLGGLGSGPELCVWSLLSLRCGTLVSADSTGSVQFWDSSHGTLLQAHTFHKGDVNALAATPNHNRIYSAGSDGQVVLYKLSNENVASSEDKCSSEVMKKWIYVGHVRAHTHDIKALTVAVPICQEELSQDEEVKRVRYKKKPNDFSYRKWAHLGVPMLISGGDDTKLFAYSAQEFTKFSPHDICPAPQRVPMQLVLNTVFNQAPLLLVQAAHSLDILCIRAKSNSFRDMACGPSKGFAKTDLLVRVKSRASRKIICSTISNSGKLFAYSDHAKPSLFELKKSGGSKCSWTVNRRQLPNILPFAHSMVFSYDSSRLIIAGHDKRIYVVDVGSLEVIHCFMPFRELQDDSLPPAEPPITKIFPSSDGQWLAAVNCFGDIYIFNMEIMRQHWFISRLDGASITAGGFPQWNNNVLVVTTSSNQVYAFDVEAKQLGDWSMRHTQALPKRFQEFPGEVIGLSFPPSATSMPVIVYSSRAMCLIDFRMSVDQDEEYVMISGQDSTVKSLKGTPIINGKLKRKLRDCQTEGRLHGRKNFEIFPLRDPVLLIGHLSKSSLLIIEKPWLEVANTFEATPVHRHVYGT 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21878030 21883774 - Sed0028163.1 Sed01g2728 702032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2728 816 SMART WD40_4 49 95 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 SMART WD40_4 237 275 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 SMART WD40_4 278 317 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 SMART WD40_4 98 181 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 SMART WD40_4 187 226 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 SMART WD40_4 531 566 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 Gene3D - 6 136 IPR015943 GO:0005515(InterPro)
Sed01g2728 816 Gene3D - 472 699 IPR015943 GO:0005515(InterPro)
Sed01g2728 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 Pfam WD domain, G-beta repeat 199 226 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 Pfam WD domain, G-beta repeat 282 316 IPR001680 GO:0005515(InterPro)
Sed01g2728 816 MobiDBLite consensus disorder prediction 130 162 - -
Sed01g2728 816 SUPERFAMILY WD40 repeat-like 168 669 IPR036322 GO:0005515(InterPro)
Sed01g2728 816 SUPERFAMILY WD40 repeat-like 14 238 IPR036322 GO:0005515(InterPro)
Sed01g2728 816 Gene3D - 137 424 IPR015943 GO:0005515(InterPro)
Sed01g2728 816 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 816 IPR044622 GO:0010073(InterPro)|GO:0035266(InterPro)
Sed01g2728 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2728 K14548 - - csv:101222880 1416.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2728 Sed-Chr1:21878030 Sed13g1816 Sed-Chr13:23116210 0.00E+00 dispersed
Sed01g2728 Sed-Chr1:21878030 Sed13g1815 Sed-Chr13:23116210 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g629 Blo01g01492 Blo12g00991 Bda01g00594 Bda03g00168 Bpe02g00456 Bpe04g00153 Bma04g00142 Bma01g02244 . . Cma01g01778 Cma09g00298 Car01g01386 . . Cpe06g00208 . . . . . . . . . . . . . . . Cone4ag1622 Cone7ag1326 . . Lsi04g01475 Csa04g02488 . . . . . . . . . . Sed01g2728 Cmo01g01836 Cmo09g00290 . . . Car09g00251 . Cpe02g00228 Bhi09g03217 Tan01g4681 Cmetu07g0687 . Hepe01g1838 Mch11g0372 . Cla05g02114 Cam05g2266 Cec05g2287 Cco05g2329 Clacu05g2263 Cmu05g2126 Cre05g2249 . . Chy07g00197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005030 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41