Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2730 | ATGGCTTCTCCGGCAGCTTTCAGGTCCTTTGTTTTCTTCCTTCTTCGTCTTCAAGTGATCTCTGTCGCCGCTGCGGCATCATCATCGTGGAAGGTGAAGTATCTGCCTGGATTCCCAGGTCCTCTTCCATTCGAATTGGAAACTGGGTATGTGGGTGTAGGAGATTCAGAAGAAATTCAATTGTTTTATTACTTTGTGAAATCCCAACGAAATCCTCAGACGGATCCGCTAATGACATGGTATATTGGAGGTCCTGGCTGCTCTGCTCTCTCTGGATTCTTCCTTGAAATTGGTCCAGTAAATTTCAAGGTAGAGCCCTATGATGGAGGTGTGCCTCAATTAGTCTTAAATCCTCATACATGGACGAAGAAAGCCAATATTCTGTTTATAGATGCGCCGGTGGGCACCGGATTTTCATATAGTAAAACTTCACACGGTACTAAAAACGGAGATATACTACAAGTTGAACAAAATCATCAATTCTTGCAAAAGTGGTTGGCAAAGCATCCGGAGTTTATATCAAATCCATTTTATGTTGGTGGAGATTCTTATTCTGGTATGATTATTCCACCTCTCACTCAAGCCATCTCAGAAGGAAATAAACATGCTTTTCCCAATATAAATCTTCAGGGATACATAATGGGAAATCCTCTTACTATATCTAACACAATAGAAAACTATCGGATTCTTTATGCATATAGGTTGTCTCTCATCTCTGCAGAATTGTTCGAGTCCTTGACAATTAGTTGCAAAGGAGAATATGTAAATGTTGATCCAAGTAATTTGGGGTGCGTCAAACATTTATCAACCTACGAAAAGTGTGTGAGTAGGATCAATTTCAAATCTATTCTCGCTAAAAAGTGTGAGGAAGTTAATATAGCACCTAAAGATACATTTGGCTCGCGAAGAATACTCCACAACACTTCCAAAATAGATATATTTGGTCTCAAGGAGTTACCTCCTTCTCTTGATTGTAATGAGTATAAATTCTACCTTCTTTATCACTGGGCCAATAACGATCAAGTTCAAAAAGCTCTTCATATACGTAAGGGAACGATTGGAGAATGGTTCAGATGTCAAAGATTTAAAGATTACCAATTTGATTTCGTAAATGTTGTTATTTATCATCTAAATCTTAGCTCTAAAGGTTATCGATCATTGGTATTTAGTGGAGATCATGATATGTTAGTGCCACTTTTAGACACACAAGCATGGATTAAATCTCTAAATTATTCTATTGTTGATGATTGGAGGCCTTTGTTTAACCTTGATGATCAAGTATTTGGATACACAACAACATATGCAAATAACATGACATTTGCAACCATAAAAGGTGGAGGACATACACCACAAATGAAGCAATATGAAACAAGCATAATGTTTAAGAGATGGATAGATGGAAAACCCTTATAA | 1413 | 37.58 | MASPAAFRSFVFFLLRLQVISVAAAASSSWKVKYLPGFPGPLPFELETGYVGVGDSEEIQLFYYFVKSQRNPQTDPLMTWYIGGPGCSALSGFFLEIGPVNFKVEPYDGGVPQLVLNPHTWTKKANILFIDAPVGTGFSYSKTSHGTKNGDILQVEQNHQFLQKWLAKHPEFISNPFYVGGDSYSGMIIPPLTQAISEGNKHAFPNINLQGYIMGNPLTISNTIENYRILYAYRLSLISAELFESLTISCKGEYVNVDPSNLGCVKHLSTYEKCVSRINFKSILAKKCEEVNIAPKDTFGSRRILHNTSKIDIFGLKELPPSLDCNEYKFYLLYHWANNDQVQKALHIRKGTIGEWFRCQRFKDYQFDFVNVVIYHLNLSSKGYRSLVFSGDHDMLVPLLDTQAWIKSLNYSIVDDWRPLFNLDDQVFGYTTTYANNMTFATIKGGGHTPQMKQYETSIMFKRWIDGKPL | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21927722 | 21940093 | + | Sed0027209.1 | Sed01g2730 | 702034 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2730 | 470 | FunFam | Carboxypeptidase | 323 | 470 | - | - | |
Sed01g2730 | 470 | Pfam | Serine carboxypeptidase | 36 | 467 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2730 | 470 | FunFam | Serine carboxypeptidase-like 11 | 26 | 470 | - | - | |
Sed01g2730 | 470 | Gene3D | alpha/beta hydrolase | 25 | 298 | IPR029058 | - | |
Sed01g2730 | 470 | Gene3D | - | 324 | 470 | - | - | |
Sed01g2730 | 470 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 165 | 190 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2730 | 470 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 438 | 451 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2730 | 470 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 130 | 140 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2730 | 470 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 117 | 129 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2730 | 470 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 28 | 464 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
Sed01g2730 | 470 | SUPERFAMILY | alpha/beta-Hydrolases | 32 | 469 | IPR029058 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2730 | Sed-Chr1:21927722 | Sed01g2732 | Sed-Chr1:21985203 | 1.00E-184 | dispersed | |
Sed01g2730 | Sed-Chr1:21927722 | Sed01g2731 | Sed-Chr1:21927722 | 3.30E-247 | tandem | |
Sed01g2730 | Sed-Chr1:21927722 | Sed13g1817 | Sed-Chr13:23125226 | 4.80E-166 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2730 | K16296 | - | csv:101207623 | 525.398 |