Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2730 ATGGCTTCTCCGGCAGCTTTCAGGTCCTTTGTTTTCTTCCTTCTTCGTCTTCAAGTGATCTCTGTCGCCGCTGCGGCATCATCATCGTGGAAGGTGAAGTATCTGCCTGGATTCCCAGGTCCTCTTCCATTCGAATTGGAAACTGGGTATGTGGGTGTAGGAGATTCAGAAGAAATTCAATTGTTTTATTACTTTGTGAAATCCCAACGAAATCCTCAGACGGATCCGCTAATGACATGGTATATTGGAGGTCCTGGCTGCTCTGCTCTCTCTGGATTCTTCCTTGAAATTGGTCCAGTAAATTTCAAGGTAGAGCCCTATGATGGAGGTGTGCCTCAATTAGTCTTAAATCCTCATACATGGACGAAGAAAGCCAATATTCTGTTTATAGATGCGCCGGTGGGCACCGGATTTTCATATAGTAAAACTTCACACGGTACTAAAAACGGAGATATACTACAAGTTGAACAAAATCATCAATTCTTGCAAAAGTGGTTGGCAAAGCATCCGGAGTTTATATCAAATCCATTTTATGTTGGTGGAGATTCTTATTCTGGTATGATTATTCCACCTCTCACTCAAGCCATCTCAGAAGGAAATAAACATGCTTTTCCCAATATAAATCTTCAGGGATACATAATGGGAAATCCTCTTACTATATCTAACACAATAGAAAACTATCGGATTCTTTATGCATATAGGTTGTCTCTCATCTCTGCAGAATTGTTCGAGTCCTTGACAATTAGTTGCAAAGGAGAATATGTAAATGTTGATCCAAGTAATTTGGGGTGCGTCAAACATTTATCAACCTACGAAAAGTGTGTGAGTAGGATCAATTTCAAATCTATTCTCGCTAAAAAGTGTGAGGAAGTTAATATAGCACCTAAAGATACATTTGGCTCGCGAAGAATACTCCACAACACTTCCAAAATAGATATATTTGGTCTCAAGGAGTTACCTCCTTCTCTTGATTGTAATGAGTATAAATTCTACCTTCTTTATCACTGGGCCAATAACGATCAAGTTCAAAAAGCTCTTCATATACGTAAGGGAACGATTGGAGAATGGTTCAGATGTCAAAGATTTAAAGATTACCAATTTGATTTCGTAAATGTTGTTATTTATCATCTAAATCTTAGCTCTAAAGGTTATCGATCATTGGTATTTAGTGGAGATCATGATATGTTAGTGCCACTTTTAGACACACAAGCATGGATTAAATCTCTAAATTATTCTATTGTTGATGATTGGAGGCCTTTGTTTAACCTTGATGATCAAGTATTTGGATACACAACAACATATGCAAATAACATGACATTTGCAACCATAAAAGGTGGAGGACATACACCACAAATGAAGCAATATGAAACAAGCATAATGTTTAAGAGATGGATAGATGGAAAACCCTTATAA 1413 37.58 MASPAAFRSFVFFLLRLQVISVAAAASSSWKVKYLPGFPGPLPFELETGYVGVGDSEEIQLFYYFVKSQRNPQTDPLMTWYIGGPGCSALSGFFLEIGPVNFKVEPYDGGVPQLVLNPHTWTKKANILFIDAPVGTGFSYSKTSHGTKNGDILQVEQNHQFLQKWLAKHPEFISNPFYVGGDSYSGMIIPPLTQAISEGNKHAFPNINLQGYIMGNPLTISNTIENYRILYAYRLSLISAELFESLTISCKGEYVNVDPSNLGCVKHLSTYEKCVSRINFKSILAKKCEEVNIAPKDTFGSRRILHNTSKIDIFGLKELPPSLDCNEYKFYLLYHWANNDQVQKALHIRKGTIGEWFRCQRFKDYQFDFVNVVIYHLNLSSKGYRSLVFSGDHDMLVPLLDTQAWIKSLNYSIVDDWRPLFNLDDQVFGYTTTYANNMTFATIKGGGHTPQMKQYETSIMFKRWIDGKPL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21927722 21940093 + Sed0027209.1 Sed01g2730 702034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2730 470 FunFam Carboxypeptidase 323 470 - -
Sed01g2730 470 Pfam Serine carboxypeptidase 36 467 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2730 470 FunFam Serine carboxypeptidase-like 11 26 470 - -
Sed01g2730 470 Gene3D alpha/beta hydrolase 25 298 IPR029058 -
Sed01g2730 470 Gene3D - 324 470 - -
Sed01g2730 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2730 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2730 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2730 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2730 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 464 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Sed01g2730 470 SUPERFAMILY alpha/beta-Hydrolases 32 469 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2730 Sed-Chr1:21927722 Sed01g2732 Sed-Chr1:21985203 1.00E-184 dispersed
Sed01g2730 Sed-Chr1:21927722 Sed01g2731 Sed-Chr1:21927722 3.30E-247 tandem
Sed01g2730 Sed-Chr1:21927722 Sed13g1817 Sed-Chr13:23125226 4.80E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2730 K16296 - csv:101207623 525.398