Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2731 ATGGCTTCTCCGGCAGCTTTCAGGTCCTTTGTTTTCTTCCTTCTTCGTCTTCAAGTGATCTCTGTCGCCGCTGCGGCATCATCATCGTGGAAGGTGAAGTATCTGCCTGGATTCCCAGGTCCTCTTCCATTCGAATTGGAAACTGGGTATGTGGGTGTAGGAGATTCAGAAGAAATTCAATTGTTTTATTACTTTGTGAAATCCCAACGAAATCCTCAGACGGATCCGCTAATGACATGGTATATTGGAGGTCCTGGCTGCTCTGCTCTCTCTGGATTCTTCCTTGAAATTGGTCCAGTAAATTTCAAGGTAGAGCCCTATGATGGAGGTGTGCCTCAATTAGTCTTAAATCCTCATACATGGACGAAGAAAGCCAATATTCTGTTTATAGATGCGCCGGTGGGCACCGGATTTTCATATAGTAAAACTTCACACGGTACTAAAAACGGAGATATACTACAAGTTGAACAAAATCATCAATTCTTGCAAAAGTGGTTGGCAAAGCATCCGGAGTTTATATCAAATCCATTTTATGTTGGTGGAGATTCTTATTCTGGTATGATTATTCCACCTCTCACTCAAGCCATCTCAGAAGGAAATAAACATGCTTTTCCCAATATAAATCTTCAGGGATACATAATGGGAAATCCTCTTACTATATCTAACACAATAGAAAACTATCGGATTCTTTATGCATATAGGTTGTCTCTCATCTCTGCAGAATTGTTCGAGTCCTTGACAATTAGTTGCAAAGGAGAATATGTAAATGTTGATCCAAGTAATTTGGGGTGCGTCAAACATTTATCAACCTACGAAAAGGAGTATAAATTCTACCTTCTTTATCACTGGGCCAATAACGATCAAGTTCAAAAAGCTCTTCATATACGTAAGGGAACGATTGGAGAATGGTTCAGATGTCAAAGATTTAAAGATTACCAATTTGATTTCGTAAATGTTGTTATTTATCATCTAAATCTTAGCTCTAAAGGTTATCGATCATTGGTATTTAGTGGAGATCATGATATGTTAGTGCCACTTTTAGACACACAAGCATGGATTAAATCTCTAAATTATTCTATTGTTGATGATTGGAGGCCTTTGTTTAACCTTGATGATCAAGTATTTGGATACACAACAACATATGCAAATAACATGACATTTGCAACCATAAAAGGTGGAGGACATACACCACAAATGAAGCAATATGAAACAAGCATAATGTTTAAGAGATGGATAGATGGAAAACCCTTATAA 1254 37.8 MASPAAFRSFVFFLLRLQVISVAAAASSSWKVKYLPGFPGPLPFELETGYVGVGDSEEIQLFYYFVKSQRNPQTDPLMTWYIGGPGCSALSGFFLEIGPVNFKVEPYDGGVPQLVLNPHTWTKKANILFIDAPVGTGFSYSKTSHGTKNGDILQVEQNHQFLQKWLAKHPEFISNPFYVGGDSYSGMIIPPLTQAISEGNKHAFPNINLQGYIMGNPLTISNTIENYRILYAYRLSLISAELFESLTISCKGEYVNVDPSNLGCVKHLSTYEKEYKFYLLYHWANNDQVQKALHIRKGTIGEWFRCQRFKDYQFDFVNVVIYHLNLSSKGYRSLVFSGDHDMLVPLLDTQAWIKSLNYSIVDDWRPLFNLDDQVFGYTTTYANNMTFATIKGGGHTPQMKQYETSIMFKRWIDGKPL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21927722 21940093 + Sed0027209.2 Sed01g2731 702035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2731 417 FunFam Carboxypeptidase 273 417 - -
Sed01g2731 417 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 411 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Sed01g2731 417 SUPERFAMILY alpha/beta-Hydrolases 32 416 IPR029058 -
Sed01g2731 417 Pfam Serine carboxypeptidase 280 414 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2731 417 Pfam Serine carboxypeptidase 36 274 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2731 417 Gene3D alpha/beta hydrolase 25 417 IPR029058 -
Sed01g2731 417 FunFam Serine carboxypeptidase-like 19 25 282 - -
Sed01g2731 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2731 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2731 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2731 417 PRINTS Carboxypeptidase C serine protease (S10) family signature 385 398 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2731 Sed-Chr1:21927722 Sed13g1817 Sed-Chr13:23125226 8.70E-151 dispersed
Sed01g2730 Sed-Chr1:21927722 Sed01g2731 Sed-Chr1:21927722 3.30E-247 tandem
Sed01g2731 Sed-Chr1:21927722 Sed01g2732 Sed-Chr1:21985203 3.40E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2731 K16296 - csv:101207623 494.582