Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2732 | ATGTTTTACAAAATAAGAAGGGAAATGTTTAATATAATGGCAAAAAATTGTTACCATTCTAAGTTGTTCTGCATTTCTCCAATGGCTTCTCCGGCTGTTTTCCACGCCTCTGTTTTCTTCCTTCTCCTTCTTCAACTGCTCTCTGCCGCCCCCTCCGCCGCAACGACGGCATCATCGTGGAAGGTGAAGTATCTGCCTGGATATTCGGGTCCTCTTCCATTCGAATTGGAAACTGGATATGTGGGTGTGGGAGATTTGGAAGAAGTTCAATTGTTTTATTACTTCGTGAAGGCCCAACGAAACCCTCAAATGGATCCGTTGTTGACATTTTTCACCGGAGGTCCCGGTTGCTCCTCTCTCTCTTCGTTTATCAATGGAGTTTGTCCTATAAATTTAAAGATAGAGCCCTACAATGGAAGCGTACCTCAATTAGTCTTCAACTCTCATACATGGACGAAGAAAGCGTATATACTGTTTATCGAAGCACCCGTAGGTACTGGATTTTCGTATAGTAGAACTTTGGAAGGTTCTAAGAAAGGAGATTTGATACAAGTTGAACAAATTCATCAATTCTTGCGAAAGTGGTTGGCGAAGCATGAAGAATTTATATCCAATCCATTTTATGTTGGAGGAGAATCATATTCGGGCATTATTATTCCATCACTCAGTCAAGCTATCTCAGAAGGAAATAGCAAGGCTTTTCCCACTATAAACCTTCAGGTTTGGAATCCTGTTACTGTACGCAACTCAATTAAAAATGATATGATTCATTATAGTTATAGGCTGTCTCTCATCTCTGATGAATTATATGAGTCATTAACAACTAGTTGTAAAGGAGCATACGAGAATGTCGATCCGGCTAATTTGGAGTGCATCAATCATCTATCAACGTATGAAAAGATGTTGCATGCTAACCAGCCAGAAGATACAACTTTTAATTTGAGAAGATCCCTCTACAACACCTCCAAAAAAGTGTTACCTTCAATTTCTCTTGATTTATGTATCTCTCTCCGATATTATTGGGCTAATGACCATCAAGTTCGAAAGGCACTTCACGTGCGTGAGGGAACTATTGGAGAATGGTTTAGATGTCAAAGTACCAAAGATTATCAATATGAATTTATGAATGTTGTTCCCTATCATGCGAATCTTAGCTCAAAAGGTTATCGGTCTTTGATTTTTAGTGGGGATCATGATTTAGAAATTCCACTTCTAGACACAGAAGCATGGATCAAATCTCTAAATTATTCCATTGTTGACGATTGGAGACCATATTTTGATACGGATGATCAAATACTTGGATACACAAGAACCTATGCAAATAGCATGACATTTGCAACAATAAAGGGTGGAGGCCACACATCACAAGTAAAGCAATACCCAACTGCCATAATGTTTTATAGATGGATTGATGGAAATTCATTATAA | 1428 | 38.59 | MFYKIRREMFNIMAKNCYHSKLFCISPMASPAVFHASVFFLLLLQLLSAAPSAATTASSWKVKYLPGYSGPLPFELETGYVGVGDLEEVQLFYYFVKAQRNPQMDPLLTFFTGGPGCSSLSSFINGVCPINLKIEPYNGSVPQLVFNSHTWTKKAYILFIEAPVGTGFSYSRTLEGSKKGDLIQVEQIHQFLRKWLAKHEEFISNPFYVGGESYSGIIIPSLSQAISEGNSKAFPTINLQVWNPVTVRNSIKNDMIHYSYRLSLISDELYESLTTSCKGAYENVDPANLECINHLSTYEKMLHANQPEDTTFNLRRSLYNTSKKVLPSISLDLCISLRYYWANDHQVRKALHVREGTIGEWFRCQSTKDYQYEFMNVVPYHANLSSKGYRSLIFSGDHDLEIPLLDTEAWIKSLNYSIVDDWRPYFDTDDQILGYTRTYANSMTFATIKGGGHTSQVKQYPTAIMFYRWIDGNSL | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21985203 | 21997334 | - | Sed0026788.1 | Sed01g2732 | 702036 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2732 | 475 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 195 | 220 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2732 | 475 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 443 | 456 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2732 | 475 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 147 | 159 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2732 | 475 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 160 | 170 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Sed01g2732 | 475 | Gene3D | alpha/beta hydrolase | 55 | 475 | IPR029058 | - | |
Sed01g2732 | 475 | SUPERFAMILY | alpha/beta-Hydrolases | 62 | 472 | IPR029058 | - | |
Sed01g2732 | 475 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 58 | 466 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
Sed01g2732 | 475 | Pfam | Serine carboxypeptidase | 66 | 472 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2730 | Sed-Chr1:21927722 | Sed01g2732 | Sed-Chr1:21985203 | 1.00E-184 | dispersed | |
Sed01g2732 | Sed-Chr1:21985203 | Sed13g1817 | Sed-Chr13:23125226 | 1.10E-144 | dispersed | |
Sed01g2731 | Sed-Chr1:21927722 | Sed01g2732 | Sed-Chr1:21985203 | 3.40E-179 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2732 | K16296 | - | ath:AT3G10450 | 449.899 |