Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2732 ATGTTTTACAAAATAAGAAGGGAAATGTTTAATATAATGGCAAAAAATTGTTACCATTCTAAGTTGTTCTGCATTTCTCCAATGGCTTCTCCGGCTGTTTTCCACGCCTCTGTTTTCTTCCTTCTCCTTCTTCAACTGCTCTCTGCCGCCCCCTCCGCCGCAACGACGGCATCATCGTGGAAGGTGAAGTATCTGCCTGGATATTCGGGTCCTCTTCCATTCGAATTGGAAACTGGATATGTGGGTGTGGGAGATTTGGAAGAAGTTCAATTGTTTTATTACTTCGTGAAGGCCCAACGAAACCCTCAAATGGATCCGTTGTTGACATTTTTCACCGGAGGTCCCGGTTGCTCCTCTCTCTCTTCGTTTATCAATGGAGTTTGTCCTATAAATTTAAAGATAGAGCCCTACAATGGAAGCGTACCTCAATTAGTCTTCAACTCTCATACATGGACGAAGAAAGCGTATATACTGTTTATCGAAGCACCCGTAGGTACTGGATTTTCGTATAGTAGAACTTTGGAAGGTTCTAAGAAAGGAGATTTGATACAAGTTGAACAAATTCATCAATTCTTGCGAAAGTGGTTGGCGAAGCATGAAGAATTTATATCCAATCCATTTTATGTTGGAGGAGAATCATATTCGGGCATTATTATTCCATCACTCAGTCAAGCTATCTCAGAAGGAAATAGCAAGGCTTTTCCCACTATAAACCTTCAGGTTTGGAATCCTGTTACTGTACGCAACTCAATTAAAAATGATATGATTCATTATAGTTATAGGCTGTCTCTCATCTCTGATGAATTATATGAGTCATTAACAACTAGTTGTAAAGGAGCATACGAGAATGTCGATCCGGCTAATTTGGAGTGCATCAATCATCTATCAACGTATGAAAAGATGTTGCATGCTAACCAGCCAGAAGATACAACTTTTAATTTGAGAAGATCCCTCTACAACACCTCCAAAAAAGTGTTACCTTCAATTTCTCTTGATTTATGTATCTCTCTCCGATATTATTGGGCTAATGACCATCAAGTTCGAAAGGCACTTCACGTGCGTGAGGGAACTATTGGAGAATGGTTTAGATGTCAAAGTACCAAAGATTATCAATATGAATTTATGAATGTTGTTCCCTATCATGCGAATCTTAGCTCAAAAGGTTATCGGTCTTTGATTTTTAGTGGGGATCATGATTTAGAAATTCCACTTCTAGACACAGAAGCATGGATCAAATCTCTAAATTATTCCATTGTTGACGATTGGAGACCATATTTTGATACGGATGATCAAATACTTGGATACACAAGAACCTATGCAAATAGCATGACATTTGCAACAATAAAGGGTGGAGGCCACACATCACAAGTAAAGCAATACCCAACTGCCATAATGTTTTATAGATGGATTGATGGAAATTCATTATAA 1428 38.59 MFYKIRREMFNIMAKNCYHSKLFCISPMASPAVFHASVFFLLLLQLLSAAPSAATTASSWKVKYLPGYSGPLPFELETGYVGVGDLEEVQLFYYFVKAQRNPQMDPLLTFFTGGPGCSSLSSFINGVCPINLKIEPYNGSVPQLVFNSHTWTKKAYILFIEAPVGTGFSYSRTLEGSKKGDLIQVEQIHQFLRKWLAKHEEFISNPFYVGGESYSGIIIPSLSQAISEGNSKAFPTINLQVWNPVTVRNSIKNDMIHYSYRLSLISDELYESLTTSCKGAYENVDPANLECINHLSTYEKMLHANQPEDTTFNLRRSLYNTSKKVLPSISLDLCISLRYYWANDHQVRKALHVREGTIGEWFRCQSTKDYQYEFMNVVPYHANLSSKGYRSLIFSGDHDLEIPLLDTEAWIKSLNYSIVDDWRPYFDTDDQILGYTRTYANSMTFATIKGGGHTSQVKQYPTAIMFYRWIDGNSL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21985203 21997334 - Sed0026788.1 Sed01g2732 702036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2732 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 195 220 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2732 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 443 456 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2732 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 147 159 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2732 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 170 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed01g2732 475 Gene3D alpha/beta hydrolase 55 475 IPR029058 -
Sed01g2732 475 SUPERFAMILY alpha/beta-Hydrolases 62 472 IPR029058 -
Sed01g2732 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 58 466 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Sed01g2732 475 Pfam Serine carboxypeptidase 66 472 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2730 Sed-Chr1:21927722 Sed01g2732 Sed-Chr1:21985203 1.00E-184 dispersed
Sed01g2732 Sed-Chr1:21985203 Sed13g1817 Sed-Chr13:23125226 1.10E-144 dispersed
Sed01g2731 Sed-Chr1:21927722 Sed01g2732 Sed-Chr1:21985203 3.40E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2732 K16296 - ath:AT3G10450 449.899