Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2733 ATGCCGATGTACCAGCCTTGTTCTGGTTTGGGTGGTGTTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTCGGCGGTGGCGGGTTAATCTTCGACGGTGGAGGGGCAGAGGAATTGGATCTGAAGGAGATGGTTACGGAGCTTGAGAACATGGAGGTTCCTTCTGTTTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAAACCTATGAACGATCCAACATTCTCAAATGGTTTTCTCTTGGCCATTTGACTTGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTAAGCAGAAGTATTTGGTGATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAACTTTTAGACACTTTGAAGAAGGTCAAGGGTCAAGCTAGAGTTCGAGGTTTGAAGGAGCTTCGGCATGTTTTTGCATCGAATTCTTCAGCGAAGAAGACTGTGGAGGACAATGGTGGTCTTGCTTTGATTTTGTCTTTGTTGGGTCCTTTCACTTCCCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAATTTGGATCTTGATGTCGAGTCAAGGAGAAACCTTGTTCAACCTGCAAAGATTTCATTAATGGTGGATATGTTGAATGAAGGATCCACTGAGACGAAAATCAACTGCATCAGGTTGATTGAAACTTTGCTGGACGGGGACGATTGTGAGGCGGGCACTGTCTCAAGTTTAAGTCTATTGGTTGGTTTGTTAAGATTGATCAAAGAGAAGAAATACCCAAATGGTGTTCTTGCCGGATTAAGATTGCTAAAAGCTCTGTGCTACCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGTGCAATCCCACAATTGATCAAAATTCTCCCAAATTTGGACCCCGAATGTTTGGAACTAACCCTTTATGTATTGGACTCACTCTCGTCGCTCTCAGAGGGCAGGGTGGCCTTTAAAGATTGCCCCAATACCATTCCAAACTTAGTCAAGTTGTTAATGAGAATTTCAGAGCGCTGCACTCAGATGGCTTTATCAATCTTATGGGCAGTTTGTGAACTTTCCCCTGAAGAATGCGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTACTTCTGGTGATTCAGAGCGGTTGCAATCCCACTCTCAAACAACGCTCCGCCGAGCTTCTCAAGCTCTGCAGCTTAAATTACACAGCAACCCACTTCATATCCAAATGTAAGCTTACAAGGACAATACAATAA 1329 45.22 MPMYQPCSGLGGVGGQVLDVETAVKDGILGGGGLIFDGGGAEELDLKEMVTELENMEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHLTCPTTMQELWDDSITPNNTLHQLIYSWFKQKYLVMKKRSEDVQGRALELLDTLKKVKGQARVRGLKELRHVFASNSSAKKTVEDNGGLALILSLLGPFTSHAVGSEAIGILVNLDLDVESRRNLVQPAKISLMVDMLNEGSTETKINCIRLIETLLDGDDCEAGTVSSLSLLVGLLRLIKEKKYPNGVLAGLRLLKALCYQEPVRNSVVSIGAIPQLIKILPNLDPECLELTLYVLDSLSSLSEGRVAFKDCPNTIPNLVKLLMRISERCTQMALSILWAVCELSPEECASQAVEAGLAAKLLLVIQSGCNPTLKQRSAELLKLCSLNYTATHFISKCKLTRTIQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22000313 22002805 + Sed0007033.1 Sed01g2733 702037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2733 442 Gene3D - 137 434 IPR011989 -
Sed01g2733 442 SUPERFAMILY RING/U-box 53 128 - -
Sed01g2733 442 PANTHER WDSAM1 PROTEIN 55 437 IPR045185 GO:0061630(InterPro)
Sed01g2733 442 SUPERFAMILY ARM repeat 228 425 IPR016024 -
Sed01g2733 442 ProSiteProfiles U-box domain profile. 57 131 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g2733 442 CDD RING-Ubox_PUB 59 109 IPR045210 -
Sed01g2733 442 SUPERFAMILY ARM repeat 152 266 IPR016024 -
Sed01g2733 442 Pfam U-box domain 58 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g2733 442 SMART Ubox_2 61 124 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g2733 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 136 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2733 Sed-Chr1:22000313 Sed11g0913 Sed-Chr11:22329183 4.00E-154 dispersed
Sed01g2733 Sed-Chr1:22000313 Sed13g1818 Sed-Chr13:23145379 2.40E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2733 - - - 0.0