Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2759 ATGGTTTTCTCTTCAGTTCCTATGTTTCTTGATCCACCCAATTGGCCTTCCCAGCAACAAAATCACCTTCAAGGAAATGGTTGTGAGACTAATAACACTCAACACGTTCCTATCCCACCACTGCCAGCTGCAGCTGGCGGTGGCGGTGGCGTTGATGGAGGTGGGGGTGGAGGACTTGGGTCGATAAGACCCGGTTCGATGACAGATCGAGCGAGGCAGGCAAAGGTACCGCAACCAGAACCCGGGCTAAAATGCCCTAGATGCGAATCAACCAACACGAAGTTTTGTTACTTCAACAACTACAGCCTCACACAGCCGCGGCACTTTTGCAAGACGTGCCGACGGTACTGGACACGAGGCGGGGCGATGAGGAGTGTGCCGGTCGGGGGAGGGTGTCGGCGGTCGAGCAGCAAGCGAAGCAGCAAAGGAGGGAGCAACAGGTCAAAATCTCCAGCTGGTTCAAGCACTTCAACAAGCACAGTTTCATCAAACAATTGCACAGCAGATATCATTAGCCATCAATTGGCTCCTCCTCCACCAACCCATTTCCCCTTTTTGGCTCCAAATTTAAACCATCTCAGTGATTTTGGCATCCCCAATTCACTCTCAGATTCATCAGTTTTATCAAGTGGAATTGCTGATCATCAACAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATAATCATCAACCAGCTGATAATTTCTCAAATTACCAACGTTTGTCAAAGCCATTAATGAACAATGGATTCAGTGCTACAACTCATCAGTTGGAGAACACTACTAGTAATAGCACACAAGGGATTAACAATTTTTCAAGAAATTTTCTTGGAATTCAACCAAATTATGGTCAGTTTTGGAATTCAACCACTACAACAACTTCAACAACAGCTGGGAACATTGCATGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1005 44.98 MVFSSVPMFLDPPNWPSQQQNHLQGNGCETNNTQHVPIPPLPAAAGGGGGVDGGGGGGLGSIRPGSMTDRARQAKVPQPEPGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSSKRSSKGGSNRSKSPAGSSTSTSTVSSNNCTADIISHQLAPPPPTHFPFLAPNLNHLSDFGIPNSLSDSSVLSSGIADHQQWKIPFFANLHQQNGMYSNFMAEDHNHQPADNFSNYQRLSKPLMNNGFSATTHQLENTTSNSTQGINNFSRNFLGIQPNYGQFWNSTTTTTSTTAGNIAWTDQISDHFNSTSSTSHLL 334
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 22714234 22716030 - Sed0018730.1 Sed01g2759 702063
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2759 334 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2759 334 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2759 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 259 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2759 334 MobiDBLite consensus disorder prediction 124 163 - -
Sed01g2759 334 MobiDBLite consensus disorder prediction 134 163 - -
Sed01g2759 334 Pfam Dof domain, zinc finger 83 137 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2759 Sed-Chr1:22714234 Sed04g1274 Sed-Chr4:26722099 2.00E-41 dispersed
Sed01g2759 Sed-Chr1:22714234 Sed03g0078 Sed-Chr3:485327 1.10E-124 wgd
Sed01g2759 Sed-Chr1:22714234 Sed03g2997 Sed-Chr3:46821264 2.80E-35 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37319 PF02701 zf-Dof 1.10E-30 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2759 - - - 0.0