Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g2759 | ATGGTTTTCTCTTCAGTTCCTATGTTTCTTGATCCACCCAATTGGCCTTCCCAGCAACAAAATCACCTTCAAGGAAATGGTTGTGAGACTAATAACACTCAACACGTTCCTATCCCACCACTGCCAGCTGCAGCTGGCGGTGGCGGTGGCGTTGATGGAGGTGGGGGTGGAGGACTTGGGTCGATAAGACCCGGTTCGATGACAGATCGAGCGAGGCAGGCAAAGGTACCGCAACCAGAACCCGGGCTAAAATGCCCTAGATGCGAATCAACCAACACGAAGTTTTGTTACTTCAACAACTACAGCCTCACACAGCCGCGGCACTTTTGCAAGACGTGCCGACGGTACTGGACACGAGGCGGGGCGATGAGGAGTGTGCCGGTCGGGGGAGGGTGTCGGCGGTCGAGCAGCAAGCGAAGCAGCAAAGGAGGGAGCAACAGGTCAAAATCTCCAGCTGGTTCAAGCACTTCAACAAGCACAGTTTCATCAAACAATTGCACAGCAGATATCATTAGCCATCAATTGGCTCCTCCTCCACCAACCCATTTCCCCTTTTTGGCTCCAAATTTAAACCATCTCAGTGATTTTGGCATCCCCAATTCACTCTCAGATTCATCAGTTTTATCAAGTGGAATTGCTGATCATCAACAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATAATCATCAACCAGCTGATAATTTCTCAAATTACCAACGTTTGTCAAAGCCATTAATGAACAATGGATTCAGTGCTACAACTCATCAGTTGGAGAACACTACTAGTAATAGCACACAAGGGATTAACAATTTTTCAAGAAATTTTCTTGGAATTCAACCAAATTATGGTCAGTTTTGGAATTCAACCACTACAACAACTTCAACAACAGCTGGGAACATTGCATGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA | 1005 | 44.98 | MVFSSVPMFLDPPNWPSQQQNHLQGNGCETNNTQHVPIPPLPAAAGGGGGVDGGGGGGLGSIRPGSMTDRARQAKVPQPEPGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSSKRSSKGGSNRSKSPAGSSTSTSTVSSNNCTADIISHQLAPPPPTHFPFLAPNLNHLSDFGIPNSLSDSSVLSSGIADHQQWKIPFFANLHQQNGMYSNFMAEDHNHQPADNFSNYQRLSKPLMNNGFSATTHQLENTTSNSTQGINNFSRNFLGIQPNYGQFWNSTTTTTSTTAGNIAWTDQISDHFNSTSSTSHLL | 334 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 22714234 | 22716030 | - | Sed0018730.1 | Sed01g2759 | 702063 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g2759 | 334 | ProSitePatterns | Zinc finger Dof-type signature. | 85 | 121 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Sed01g2759 | 334 | ProSiteProfiles | Zinc finger Dof-type profile. | 83 | 137 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Sed01g2759 | 334 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 72 | 259 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Sed01g2759 | 334 | MobiDBLite | consensus disorder prediction | 124 | 163 | - | - | |
| Sed01g2759 | 334 | MobiDBLite | consensus disorder prediction | 134 | 163 | - | - | |
| Sed01g2759 | 334 | Pfam | Dof domain, zinc finger | 83 | 137 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2759 | Sed-Chr1:22714234 | Sed04g1274 | Sed-Chr4:26722099 | 2.00E-41 | dispersed | |
| Sed01g2759 | Sed-Chr1:22714234 | Sed03g0078 | Sed-Chr3:485327 | 1.10E-124 | wgd | |
| Sed01g2759 | Sed-Chr1:22714234 | Sed03g2997 | Sed-Chr3:46821264 | 2.80E-35 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 37319 | PF02701 | zf-Dof | 1.10E-30 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g2759 | - | - | - | 0.0 |