Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2762 ATGGAATTTGCCGACGAGCTCACAGCCGGAGCCGCCGCAGCCGCCGCCGCTTCCGATTCCAACCGCCTCAATCCCTCCGACACCGCAGACGGCGGCGACCTGTCATCCTCCGACAACGACACTGAAGATGCACATCCTGCTTCACTCGCACCGCCAGTATCACCCATTCTTCCTTTGCAAAGTAAATGTAATGTAGGAGTTCACGCTGATATGGATGATAAATTGGAGACAATTCAAACTATATGTCAGAAAATTGTGGACACGACAAACTTGTACTCATTTTCTAAATTGGATGACCAACAAGTATATTCTCTAATGAGGCTGAGGGAAATTTCTCATCGGGTTATTAATGGCCGAGATTCAAGGGTGACAAAAAATGATGTGATTAGTGCTATGTGCTTTTACATCAACAGGATGGCAGGTAAGTGCAAGGATATTCTTGACATTTTGAATGAGATGCCATGTAAAGACTTAGACGACCAGCAAATGCAACAGCTATTGAGATTGAAAGAGTTTCTATGTGGGATTGTTGATGGAGCTAAAGATGTGGAGACTGAACCTTCCCATATTATTGAACAGGGAATAGCAAATGATGTGTGGACAACAGAAAGTCTTGAGGTCGAGCCGATTGACTTCAGCAATGATGATGTACTGCTTGGAGATGCACAAATTATAATGGTTGAAGATGAACGGGCAGTGGCTGAAGCTAGGCTCGAGAATCCATATTTTGATCTGTCACATGTTAAGCACAGTGTTAGCTGGCCACCAAATAGTACCTTAACCTTAGAGTGGGTTGTAGAGATGATGAAAACACTGGAACAGACTTCAAGAAACTACTCGCCTGCAGACTTTCAACTTGTCATGCCAGTTGCTGTGGTAGATGCAATACTAGATGTAGCTGCAAGTATCCTTCACAAGGAACCAAACTGTGTGGAAATTGACTGCCACGGAGAAGTTTCAAAAGTTGTTATAGTTGGGGACATCCATGGTCATTATCATGACTTACTTCATCTCTTCGAACTTGCTAACTTACCATCTAAGAGCCAGTATTACGTTTTTAATGGTAATTATGTGGACAGAGGAGCATGGGGACTGGAGGTGTTTTTGGTCTTGTTGGCGTGGAAGATCGTGATGCCTGATAGAGTATGTCTACTTCGTGGAAATCATGAAACCAGAATTTGTACATCATCTTATGGTTTTGAGAAAGAAGTAAGGACAAAATACGGTGAGCAAGGTGAAAATGTATATAACAGGTGCTTGGGAACATTTAAGGAACTCCCTTTGGCTGCAATTATTGCTGGAAAAGTATATACAACCCATGGAGGGTTATTTCGTAAGCCATGCAATCCTGATGTGCAGAATTACGAGGAAATGAAGACACACGAGCTGGAGACTGGATCCTTGCAAGACTTATCTAAGCTCGAAAGGTTTTTTGTTGATGTTCCAACTAAAGATGAGGATCCAAATATAATTTTGGCAGATGTATTGTGGTCAGATCCTTCTAAAGTAGATGGTTTAAGAAAAAACCAAGCGAGAGGAGCAGGCTTATTATGGGGTCCCGATTCGACTGAAGCATTCTTAAAACTATCTAATTTAAAGTTGATCATTAGATCACATGAAGGTCCAGATTCAAGGGATGGTAAGATTGATTTTGATGATATGATTATGGGTTATAGCACAGATCACAACAGAGAATCAGGGAAACTATATACTCTATTTAGCGCTCCAGATTTCCCACAGTTTGGTCGGAAGAGCTACAGTAATGAGGGAGCATATGCTACTTTGAAGTATCCTGATTTTGAAATTCCATCCTTCCATACGTTTAAAGCTGTAGATAAACCGAAGATAGACGTTTGCTATTTTGGTTGTGAAGGACATGATGTTGATTTAGACTTGACATTAATGGCTCTGGCTGATACCGTCTCTTCTAAAAACTCTAGTCCTATTGAGATTCATTCTGGGGTTGATTTTGAGGCATTAGGCATATTAAACCCACCTTCTTGGAGCATTACATTGACAGATGATGCTACAGGTACTCAAAACCTTCGAATTCCGAAGGCTCCCGTAGTGGAAGGGCTGCCTTTGCCGCCAAGCATTGAGGAGCCGCATAAGGCTGCTTATGAGTACTTCCTGGAGCTCATTGCCGGACTGAAATTTATGCTTCAAACCGCGGAAAATAAGGACAAGTTACCTGTTCCCCATCGAAAGAGGAAGAAATGCAGCTAA 2226 42.18 MEFADELTAGAAAAAAASDSNRLNPSDTADGGDLSSSDNDTEDAHPASLAPPVSPILPLQSKCNVGVHADMDDKLETIQTICQKIVDTTNLYSFSKLDDQQVYSLMRLREISHRVINGRDSRVTKNDVISAMCFYINRMAGKCKDILDILNEMPCKDLDDQQMQQLLRLKEFLCGIVDGAKDVETEPSHIIEQGIANDVWTTESLEVEPIDFSNDDVLLGDAQIIMVEDERAVAEARLENPYFDLSHVKHSVSWPPNSTLTLEWVVEMMKTLEQTSRNYSPADFQLVMPVAVVDAILDVAASILHKEPNCVEIDCHGEVSKVVIVGDIHGHYHDLLHLFELANLPSKSQYYVFNGNYVDRGAWGLEVFLVLLAWKIVMPDRVCLLRGNHETRICTSSYGFEKEVRTKYGEQGENVYNRCLGTFKELPLAAIIAGKVYTTHGGLFRKPCNPDVQNYEEMKTHELETGSLQDLSKLERFFVDVPTKDEDPNIILADVLWSDPSKVDGLRKNQARGAGLLWGPDSTEAFLKLSNLKLIIRSHEGPDSRDGKIDFDDMIMGYSTDHNRESGKLYTLFSAPDFPQFGRKSYSNEGAYATLKYPDFEIPSFHTFKAVDKPKIDVCYFGCEGHDVDLDLTLMALADTVSSKNSSPIEIHSGVDFEALGILNPPSWSITLTDDATGTQNLRIPKAPVVEGLPLPPSIEEPHKAAYEYFLELIAGLKFMLQTAENKDKLPVPHRKRKKCS 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22791569 22812179 + Sed0000024.1 Sed01g2762 702066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2762 741 SUPERFAMILY Metallo-dependent phosphatases 266 616 IPR029052 -
Sed01g2762 741 ProSitePatterns Serine/threonine specific protein phosphatases signature. 385 390 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 Gene3D - 226 624 IPR029052 -
Sed01g2762 741 SMART pp2a_7 288 612 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 MobiDBLite consensus disorder prediction 19 35 - -
Sed01g2762 741 PRINTS Serine/threonine phosphatase family signature 351 378 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 PRINTS Serine/threonine phosphatase family signature 384 408 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 PRINTS Serine/threonine phosphatase family signature 421 447 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 PRINTS Serine/threonine phosphatase family signature 568 584 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 PRINTS Serine/threonine phosphatase family signature 474 501 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 PRINTS Serine/threonine phosphatase family signature 321 348 IPR006186 GO:0016787(InterPro)
Sed01g2762 741 MobiDBLite consensus disorder prediction 1 55 - -
Sed01g2762 741 Pfam Calcineurin-like phosphoesterase 321 540 IPR004843 GO:0016787(InterPro)
Sed01g2762 741 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 235 619 IPR051134 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2762 Sed-Chr1:22791569 Sed04g1051 Sed-Chr4:14500781 5.40E-111 dispersed
Sed01g2762 Sed-Chr1:22791569 Sed05g3252 Sed-Chr5:42041059 1.00E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2762 K04460 - csv:101211172 1300.03