Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2771 ATGGAGGAAAAGGGGAAAATATTTGAAAAGGCAAAGCCATATTTAGGAGCAATGGCTCTAAGATTTGGTTCAGCAGGAATGTCTATAATCTCAAAGGCTGCTTTGAACCAAGGAATGAACCAACTTGTCACCCTTGTTTATCGCTACTCTATTGGTGCCCTTGTTGTTGCTCCCTTTGCTTTTGTCTTAGACAGCAGGAAAATAAGGCCAAAGATGACTCTCCGTGTCTTCTTTAAGATTCTTCTACTTGCCTTACTCGAGCCTGTAATAGCCCAGAGTTTGATATACTCTGGTACTAAATACACAACTGCAACATTTGCAACAGCCATGTGCAATATTCTACCTGCCTTTGCATTTCTAATGGCTTGGATTTGCAGAATGGAAAAGGTGAATATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGCACTTTAGTTACAGTGGGAGGAGCAATGATGATGAGTGTTCTAAAAGGGCCCATGTTGAATCTGCCATGGACCAAAGAAAACAACATAATCCCTAATTCAATCCTTGCAAACAACCAACAACCCATTAAGGCTGCCATTGCTATTACCATTTCAAGTATCTGCTCCTCTGCCTTCACCATTCTGCTGGCAGATACAATAAGATCATACCCAGCTGAGCTTACACTAACAACTTTCATATGCTTGGCTGGTGCTGTGGAAAGTACTATTTTAGCCTTGGCATTTGAATGGAACAATCCAGCTGCATGGGCCTTACATGCAGATTTCATACTCTTGGCTGCCCTCTATGGTGGAATAATATCTTCTGGAATTAATTATTATATCCAAGGAGTGGTGGTGAAGTTAAAAGGACCTGTATTTGTAACTGCTTTCAATCCTCTTAGCATGGTCATAGTTGCTGTTATTAGTTCATTCGTATTCGCCGAAAGATTGCCCTTAGGAAGGATTATTGGAGCAGGTGTGATAATTATAGGGCTTTACTTGGTTCTATGGGGCAAGAGCAAAGATGAGGTTCCAATGAAAGTGGGAAATGATCTTGAATTACCAACTACCACAAACCATCAACACATCAAAGCTAATGATGCCTCAACAACACTTACCAATTCCACTACTTGA 1101 40.6 MEEKGKIFEKAKPYLGAMALRFGSAGMSIISKAALNQGMNQLVTLVYRYSIGALVVAPFAFVLDSRKIRPKMTLRVFFKILLLALLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMSVLKGPMLNLPWTKENNIIPNSILANNQQPIKAAIAITISSICSSAFTILLADTIRSYPAELTLTTFICLAGAVESTILALAFEWNNPAAWALHADFILLAALYGGIISSGINYYIQGVVVKLKGPVFVTAFNPLSMVIVAVISSFVFAERLPLGRIIGAGVIIIGLYLVLWGKSKDEVPMKVGNDLELPTTTNHQHIKANDASTTLTNSTT 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22940492 22945176 + Sed0020152.1 Sed01g2771 702075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2771 366 PANTHER WAT1-RELATED PROTEIN 18 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed01g2771 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Sed01g2771 366 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020(InterPro)
Sed01g2771 366 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020(InterPro)
Sed01g2771 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2771 Sed-Chr1:22940492 Sed03g0063 Sed-Chr3:407753 1.20E-159 dispersed
Sed01g2771 Sed-Chr1:22940492 Sed14g0458 Sed-Chr14:4628729 1.00E-94 wgd
Sed01g2771 Sed-Chr1:22940492 Sed03g0062 Sed-Chr3:378573 2.00E-95 wgd
Sed01g2771 Sed-Chr1:22940492 Sed03g2986 Sed-Chr3:46697725 8.30E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2771 - - - 0.0