Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2773 ATGGGAATTCATAAATTCATAGTGGGAACACCGAGCGATGCGAGCGAACCAGAGGCGATTAAGGCCGCCTTCGCCGAATTCTTCTCTATGATCATATTTGTTTTCGCGGGACAAGGATCCGCTTTGGCTTTCAATAAGTTAACGGACGGCGGATCTGCCACGGCGGCGGGGTTGATGGTGCCCGCCGTGGCTCACGCATTTGCCTTAACTGTGGCGGTGTCCGTCGGAGCCAACATCTCGGGCGGCCACGTGAATCCGGCGGTCACGTTTGGCGCACTCATGGGTGGAAACATATCGTTGTTCAGAAGTTTAGTGTATTGGATCGCTCAATTGCTTGGCTCTGTTGCTGCCTGCTTCCTTCTTAAGTTTGCAACTGCTGGACTGGTAACACCAGCATTTGCCCTATCTTCAGGAGTTTCTACATGGAATGCAGTTATATTTGAGGCAGTGATGACTTTTGGATTGGTGTATACAGTTTATGCAACAGCAATTGATCCAAAGAGGGAAAATTTGGGGATTATTGCTCCAATTGCTATTGGTTTGATTGTTGGAGCCAACATTTTGGTTGGTGGTGCTTTTGATGGAGCCTCCATGAACCCTGCTGTCTCCTTTGGCCCGGCTGTGGTCAGCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCCATGGCTGGTGCGGCCATTGCAGCCATTGTTTATGACACCATCTTTATCTCTGACTCCATTCATGATCCTCTTACTCAGTATAATGATTTCTAG 762 49.34 MGIHKFIVGTPSDASEPEAIKAAFAEFFSMIIFVFAGQGSALAFNKLTDGGSATAAGLMVPAVAHAFALTVAVSVGANISGGHVNPAVTFGALMGGNISLFRSLVYWIAQLLGSVAACFLLKFATAGLVTPAFALSSGVSTWNAVIFEAVMTFGLVYTVYATAIDPKRENLGIIAPIAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWSWTHHWVYWLGPMAGAAIAAIVYDTIFISDSIHDPLTQYNDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22949525 22950744 - Sed0011818.1 Sed01g2773 702077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2773 253 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Sed01g2773 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2773 253 PANTHER AQUAPORIN-8 8 244 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed01g2773 253 Gene3D Glycerol uptake facilitator protein. 5 251 IPR023271 -
Sed01g2773 253 SUPERFAMILY Aquaporin-like 19 241 IPR023271 -
Sed01g2773 253 FunFam Probable aquaporin TIP1-1 4 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2773 Sed-Chr1:22949525 Sed03g2041 Sed-Chr3:14307620 1.70E-88 dispersed
Sed01g2773 Sed-Chr1:22949525 Sed14g0365 Sed-Chr14:3816260 6.10E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2773 K09873 - csv:101222909 431.409