Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2777 ATGGTTGGAATATTGGAATGTGTGATGGGTCTCTTGAGGCTTGGATGGCTCATTCGGTTTATCAGCCACTCTGTTATCTCTGGCTTTACTACCGCTTCTGCCATTGTGATTGGATTATCTCAGGTGAAATACTTTTTGGGGTACAATGTATCAAGAAGTAGCAAAATTGTGCCTATAATTGAGAGCATAATAGCTGGAGCAGATGGGTTCTTATGGGCACCTTTCATTATGGGATCAGTTATCCTTGCGGTACTTCAAATCATGAAGCATTTGGGAAAAACGAGGAAGCATTTACGGTTTCTCAGAGTTGCTGGTCCCCTTACAGCTATTGTTATGGGTACAACATTGGTGAAAGTATTGAATCTGCCTTCCATTTCTTTGGTTGGTGACATTCCCCAAGGCCTTCCGAAATTTTCTGTTCCTAAAAGATTCGAGCATGTGAAGTCGTTGATTCCAACTGCCTTTCTGATCACAGGAGTAGCTATACTGGAATCTGTTGGGATTGCGAAAGCATTAGCAGCCAAGAACGGGTATGAGTTAGATTCAAATCAGGAGTTATTTGGTCTTGGAGTATCCAATGTCGTTGGCTCATTCTTTTCAGCATATCCCACAACAGGTTCTTTCTCAAGATCAGCGGTGAGCCACGAAAGTGGAGCAAAAACTGGCTTATCTCAGATTGTTACGGGATTAATTATGGGCGGCGCCCTTCTTTTCTTGACTCCATTGTTTGAGCACATACCTCAGTGTGCTTTGGCTGCCATTGTGATATCTGCTGTAATAACTTTGGTGGATTACGATGAGGCTATTTTTTTGTGGCGAATAGATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTGCTACATTGTTCCTTGGTATTGAGATTGGTGTCTTACTTGGGGTGGGTGTGTCACTGGTCTTTGTCATTCACGAATCTGCAAATCCACATATAGCTGTATTGGGGCGTCTTCCTGGCACCACTGTGTATAGAAACGTTCAACAGTATCCTGAGGCATATACTTACAATGGAATTGTGATTGTTCGGATTGATGCACCAATTTATTTTGCTAATACGAGTTACATCAAAGACAGGTTACGTGAATATGAAATTGAAGTGGATCGATCTACTGGTCGTGGACCGGATGTTGAAAGAGTCTATTTCGTGATTATTGAGATGGCACCTGTTACTTATATCGATTCGAGTGCTGTCCAGACACTAAAAGATTTATATCAAGAGTACAAACTCCGTGATATTCAGATTGCCATTTCCAATCCGAATCGAGATGTTCTACTTACATTTTCAAGATCTGGCGTGGTTGAGCTAATTGGCAAGGAGTGGTTTTTTGTGAGAGTTCATGATGCAGTTCAAGTTTGTCTTCAGCATGTGGAGAGCTTAAAGGAAACAACCAAGAGAGAAGATTCTTCACCAAAAAATGCATCAAGTTTTCTCGAAAGGTTAGTAAAGTCTAGACGCGAGGATTTATCAGTGAGCCAATTGGAGTCGGGCTTCCATAAGCTTCCAAGTTCTAACGAAATCGACCCTCAAATGGAACCATTACTCTCTCAAAATCCTTGA 1578 41.51 MVGILECVMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQVKYFLGYNVSRSSKIVPIIESIIAGADGFLWAPFIMGSVILAVLQIMKHLGKTRKHLRFLRVAGPLTAIVMGTTLVKVLNLPSISLVGDIPQGLPKFSVPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVVGSFFSAYPTTGSFSRSAVSHESGAKTGLSQIVTGLIMGGALLFLTPLFEHIPQCALAAIVISAVITLVDYDEAIFLWRIDKKDFLLWVITAIATLFLGIEIGVLLGVGVSLVFVIHESANPHIAVLGRLPGTTVYRNVQQYPEAYTYNGIVIVRIDAPIYFANTSYIKDRLREYEIEVDRSTGRGPDVERVYFVIIEMAPVTYIDSSAVQTLKDLYQEYKLRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLKETTKREDSSPKNASSFLERLVKSRREDLSVSQLESGFHKLPSSNEIDPQMEPLLSQNP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22971448 22986710 - Sed0024194.1 Sed01g2777 702081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2777 525 NCBIfam sulfate permease 1 455 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2777 525 SUPERFAMILY SpoIIaa-like 337 459 IPR036513 -
Sed01g2777 525 Gene3D STAS domain 315 463 IPR036513 -
Sed01g2777 525 ProSiteProfiles STAS domain profile. 335 459 IPR002645 -
Sed01g2777 525 CDD STAS_SulP_like_sulfate_transporter 336 452 - -
Sed01g2777 525 PANTHER SULFATE TRANSPORTER 1 461 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2777 525 MobiDBLite consensus disorder prediction 502 525 - -
Sed01g2777 525 FunFam Sulfate transporter 31 315 462 - -
Sed01g2777 525 Pfam STAS domain 336 455 IPR002645 -
Sed01g2777 525 Pfam Sulfate permease family 1 285 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2777 Sed-Chr1:22971448 Sed03g0853 Sed-Chr3:5181786 8.80E-84 dispersed
Sed01g2777 Sed-Chr1:22971448 Sed03g0060 Sed-Chr3:356293 1.40E-278 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2777 K18059 - csv:101202870 939.873