Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2817 ATGGGGAAGAAGGGTGGCTGGTTTTCTGCTGTGAAGAGAGCATTGACTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACTAACAAATCAAAGAAAAAATGGTTTGGGAAGCCAAAGAAATTGGAGATAGTGGAATCTGGAGAGCCAGTTCCATTGGATGTGTCTGTTCTACCTATTGAAGAGGTGAAACTTGCAGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACGGCAGTGGCGGCCGAGGCAGCCGTGGCAGCGGCTCAGGCTGCGGCCGAGGTTGTTCGGCTCACCACGATCCCTCGGTACTCCGGGAAATCGAAGGATGAAATAGCAGCCATCAAGATTCAGACAGCATTCCGTGGCTATATGGCGAGGAGGGCCCTACGGGCATTAAAAGGGTTGGTGAGGCTGAAGTCATTAATTCAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGAAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAAATTAACTGCTCATGCAAACAATGAATGGGATGACAGTACCAAATCAAAGGCCCAAGTTGAAGCCAGATTAGTTAACAGACAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCTTATGCTTACTCTCATCAGAATTCATGGAAGAACTCCTCGAAATCTGCGAACGCTACGTTCATGGACCCGAACAATCCACATTGGGGCTGGAGTTGGTTAGAGCGATGGATGTCCGCTCGTCCATGGGAGACCAAAACCACCGTCGATAACCACGATCGCGGCTCTGTCAAGAGTGCGATCAGCCACGCAACCTCGATCGGAGACATTGCCAAAGCTTACTCCCGCCGTGATCACAATCTGGACATCAAGCCTCTTCCAAGGACTCCAAACCGTGCACTGAGTCGCCAATCGCCGGCTACACCTACGAAATCGCAATCGTCGCTATCTGCAGGGAGGAAATTGAAGCCGGCGAGTGCAAGAGGATTCGGCTGGGGCGGCGATGACGATTCCAGAAGCGGATTGAGCGTCAAATCGGAGCGGTACCGGCGACATAGCATCGCCGGATCATCGGTTAGGGACGACGAAAGCTTCACAAGCTCGCCGTCGGTTCGAAGCTACATGGCGTCCACAGAAGCAACTAGGGCTAGGTCACGGCTTTCGAGTCCGATGAGAACAGAGAAGACGACGGTGGCGACGCCGGAGAAAGGAGTGGCGAGTGGCGGCGCAAAGAAGCGGCTCTCATTTCCTGCCGCGTCGCCTACGGCGGCGACGGCAAGGAGACACTCAGGCCCGCCAAGAATTGACGCTAGCCCCATCAAGAATGTTGCAGCTAGAGATTTTACCGGCGAGAGCAGGCAAGAAAATGGTGAATAA 1470 51.29 MGKKGGWFSAVKRALTPESKEKKDQKTNKSKKKWFGKPKKLEIVESGEPVPLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKDEIAAIKIQTAFRGYMARRALRALKGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRERRIRMSEENQALQRQLQQKHERELEKLTAHANNEWDDSTKSKAQVEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANATFMDPNNPHWGWSWLERWMSARPWETKTTVDNHDRGSVKSAISHATSIGDIAKAYSRRDHNLDIKPLPRTPNRALSRQSPATPTKSQSSLSAGRKLKPASARGFGWGGDDDSRSGLSVKSERYRRHSIAGSSVRDDESFTSSPSVRSYMASTEATRARSRLSSPMRTEKTTVATPEKGVASGGAKKRLSFPAASPTAATARRHSGPPRIDASPIKNVAARDFTGESRQENGE 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23397597 23401995 - Sed0000704.1 Sed01g2817 702121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2817 489 Coils Coil 170 197 - -
Sed01g2817 489 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Sed01g2817 489 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
Sed01g2817 489 MobiDBLite consensus disorder prediction 1 33 - -
Sed01g2817 489 PANTHER IQ-DOMAIN 5-RELATED 4 434 - -
Sed01g2817 489 MobiDBLite consensus disorder prediction 316 489 - -
Sed01g2817 489 MobiDBLite consensus disorder prediction 329 351 - -
Sed01g2817 489 MobiDBLite consensus disorder prediction 390 427 - -
Sed01g2817 489 MobiDBLite consensus disorder prediction 371 389 - -
Sed01g2817 489 ProSiteProfiles IQ motif profile. 114 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2817 Sed-Chr1:23397597 Sed03g0042 Sed-Chr3:290565 3.00E-187 dispersed
Sed13g0168 Sed-Chr13:1062102 Sed01g2817 Sed-Chr1:23397597 4.80E-06 dispersed
Sed01g2817 Sed-Chr1:23397597 Sed01g2818 Sed-Chr1:23397597 3.10E-256 tandem
Sed04g3251 Sed-Chr4:43021738 Sed01g2817 Sed-Chr1:23397597 8.90E-15 transposed
Sed01g2817 Sed-Chr1:23397597 Sed14g0426 Sed-Chr14:4402517 6.70E-102 wgd
Sed01g2817 Sed-Chr1:23397597 Sed03g0040 Sed-Chr3:290565 3.00E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2817 - - - 0.0