Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2818 ATGGGGAAGAAGGGTGGCTGGTTTTCTGCTGTGAAGAGAGCATTGACTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACTAACAAATCAAAGAAAAAATGGTTTGGGAAGCCAAAGAAATTGGAGATAGTGGAATCTGGAGAGCCAGTTCCATTGGATGTGTCTGTTCTACCTATTGAAGAGGTGAAACTTGCAGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACGGCAGTGGCGGCCGAGGCAGCCGTGGCAGCGGCTCAGGCTGCGGCCGAGGTTGTTCGGCTCACCACGATCCCTCGGTACTCCGGGAAATCGAAGGATGAAATAGCAGCCATCAAGATTCAGACAGCATTCCGTGGCTATATGGCGAGGAGGGCCCTACGGGCATTAAAAGGGTTGGTGAGGCTGAAGTCATTAATTCAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGAAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAAATTAACTGCTCATGCAAACAATGAATGGGATGACAGTACCAAATCAAAGGCCCAAGTTGAAGCCAGATTAGTTAACAGACAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCTTATGCTTACTCTCATCAGAATTCATGGAAGAACTCCTCGAAATCTGCGAACGCTACGTTCATGGACCCGAACAATCCACATTGGGGCTGGAGTTGGTTAGAGCGATGGATGTCCGCTCGTCCATGGGAGACCAAAACCACCGTCGATAACCACGATCGCGGCTCTGTCAAGAGTGCGATCAGCCACGCAACCTCGATCGGAGACATTGCCAAAGCTTACTCCCGCCGTGATCACAATCTGGACATCAAGCCTCTTCCAAGGACTCCAAACCGTGCACTGAGTCGCCAATCGCCGGCTACACCTACGAAATCGCAATCGTCGCTATCTGCAGGGAGGAAATTGAAGCCGGCGAGTGCAAGAGGATTCGGCTGGGGCGGCGATGACGATTCCAGAAGCGGATTGAGCGTCAAATCGGAGCGGTACCGGCGACATAGCATCGCCGGATCATCGGTTAGGGACGACGAAAGCTTCACAAGCTCGCCGTCGGTTCGAAGCTACATGGCGTCCACAGAAGCAACTAGGGCTAGGTCACGGCTTTCGAGTCCGATGAGAACAGAGAAGACGACGGTGGCGACGCCGGAGAAAGGAGTGGCGAGTGGCGGCGCAAAGAAGCGGCTCTCATTTCCTGCCGCGTCGCCTACGGCGGCGACGGCAAGGAGACACTCAGGCCCGCCAAGAATTGACGCTAGCCCCATCAAGAATGTTGCAGCTAGAGATTTTACCGGCGAGAGCAGGTAG 1455 51.55 MGKKGGWFSAVKRALTPESKEKKDQKTNKSKKKWFGKPKKLEIVESGEPVPLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKDEIAAIKIQTAFRGYMARRALRALKGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRERRIRMSEENQALQRQLQQKHERELEKLTAHANNEWDDSTKSKAQVEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANATFMDPNNPHWGWSWLERWMSARPWETKTTVDNHDRGSVKSAISHATSIGDIAKAYSRRDHNLDIKPLPRTPNRALSRQSPATPTKSQSSLSAGRKLKPASARGFGWGGDDDSRSGLSVKSERYRRHSIAGSSVRDDESFTSSPSVRSYMASTEATRARSRLSSPMRTEKTTVATPEKGVASGGAKKRLSFPAASPTAATARRHSGPPRIDASPIKNVAARDFTGESR 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23397597 23401995 - Sed0000704.2 Sed01g2818 702122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2818 484 Coils Coil 170 197 - -
Sed01g2818 484 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Sed01g2818 484 MobiDBLite consensus disorder prediction 1 33 - -
Sed01g2818 484 MobiDBLite consensus disorder prediction 316 484 - -
Sed01g2818 484 MobiDBLite consensus disorder prediction 329 351 - -
Sed01g2818 484 MobiDBLite consensus disorder prediction 390 427 - -
Sed01g2818 484 PANTHER IQ-DOMAIN 5-RELATED 4 433 - -
Sed01g2818 484 MobiDBLite consensus disorder prediction 371 389 - -
Sed01g2818 484 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
Sed01g2818 484 ProSiteProfiles IQ motif profile. 114 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2818 Sed-Chr1:23397597 Sed03g0040 Sed-Chr3:290565 3.00E-187 dispersed
Sed01g2817 Sed-Chr1:23397597 Sed01g2818 Sed-Chr1:23397597 3.10E-256 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2818 - - - 0.0