Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2821 | ATGTCTTGTTCCGCCTCGAGTAAACCTTCAGCGGGCCCGGGTTCGTATCAGATTACTGGTACTTCCCAGGCTGATTGTGCCGTTCTTATCATCGACTCCACTACCGGAGGTTTTGAAGCCGGGATTTCTAAGGACGGGCAGACCCGTGAGCATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACTCCCAAGTATTCCAAGTCTAGGTACGATGAAATTGTGAAGGAAGTTTCATCCTACCTTAAGAAGGTTGGCTACAACCCAGACAAAATCCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAATCTGGACTGGTACAAAGGCCCGACTCTTCTCGAGGCTCTCGACTTGATCCATGAGCCTAAGAGACCATCCGACAAGCCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTCCCAGTGGGTCGTGTTGAGACTGGCATTATAAAACCTGGCATGGTCGTCACCTTTGCCCCATCTGGACTGACAACTGAAGTCAAATCTGTTGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAATGTTGGGTTCAACGTGAAGAACGTCTCCGTGAAGGATCTCAAGCGTGGCTATGTTGCTTCAAATTCAAAGGATGATCCTGCCAAGGAAGCTGCCAACTTCACAGCTCAAGTTATCATCATGAACCATCCAGGACAAATCGGTAACGGTTACGCCCCTGTTCTCGACTGCCACACCTCCCACATTGCTGTCAAATTTGCCGAGATTTTGACCAAGATCGACAGGCGATCGGGTAAAGAACTCGAGAAAGAACCCAAGTTTTTGAAAAATGGTGATGCCGGATTCGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACCTTCGCCGAGTACCCTCCTCTAGGGCGCTTCGCCGTGAGGGACATGCGCCAAACTGTGGCCGTTGGTGTCATCAAGAGCGTTGAGAAGAAGGATCCAAGTGGCGCTAAGGTCACCAAATCTGCTGCTAAGAAAACTGGTAAATGA | 1095 | 49.77 | MSCSASSKPSAGPGSYQITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKTGK | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23499968 | 23502341 | + | Sed0019005.1 | Sed01g2821 | 702125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2821 | 364 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 241 | 344 | IPR009001 | - | |
Sed01g2821 | 364 | PANTHER | TRANSLATION FACTOR | 18 | 342 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
Sed01g2821 | 364 | FunFam | Elongation factor 1-alpha | 144 | 231 | - | - | |
Sed01g2821 | 364 | Pfam | GTP-eEF1A C-terminal domain-like | 242 | 342 | IPR054696 | - | |
Sed01g2821 | 364 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 17 | 164 | IPR027417 | - | |
Sed01g2821 | 364 | Gene3D | - | 15 | 138 | IPR027417 | - | |
Sed01g2821 | 364 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 1 | 145 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed01g2821 | 364 | CDD | EF1_alpha_III | 238 | 341 | - | - | |
Sed01g2821 | 364 | Gene3D | Translation factors | 238 | 345 | - | - | |
Sed01g2821 | 364 | Pfam | Elongation factor Tu domain 2 | 163 | 228 | IPR004161 | GO:0005525(InterPro) | |
Sed01g2821 | 364 | FunFam | Elongation factor 1-alpha | 238 | 345 | - | - | |
Sed01g2821 | 364 | Gene3D | Translation factors | 144 | 231 | - | - | |
Sed01g2821 | 364 | Pfam | Elongation factor Tu GTP binding domain | 18 | 136 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed01g2821 | 364 | CDD | EF1_alpha_II | 145 | 235 | - | - | |
Sed01g2821 | 364 | SUPERFAMILY | Translation proteins | 146 | 236 | IPR009000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2821 | Sed-Chr1:23499968 | Sed04g2076 | Sed-Chr4:35072490 | 3.70E-190 | dispersed | |
Sed01g2821 | Sed-Chr1:23499968 | Sed01g2822 | Sed-Chr1:23512250 | 5.00E-195 | tandem | |
Sed01g2821 | Sed-Chr1:23499968 | Sed03g0039 | Sed-Chr3:284677 | 2.80E-182 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2821 | K03231 | - | csv:105434427 | 684.871 |