Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2821 ATGTCTTGTTCCGCCTCGAGTAAACCTTCAGCGGGCCCGGGTTCGTATCAGATTACTGGTACTTCCCAGGCTGATTGTGCCGTTCTTATCATCGACTCCACTACCGGAGGTTTTGAAGCCGGGATTTCTAAGGACGGGCAGACCCGTGAGCATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACTCCCAAGTATTCCAAGTCTAGGTACGATGAAATTGTGAAGGAAGTTTCATCCTACCTTAAGAAGGTTGGCTACAACCCAGACAAAATCCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAATCTGGACTGGTACAAAGGCCCGACTCTTCTCGAGGCTCTCGACTTGATCCATGAGCCTAAGAGACCATCCGACAAGCCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTCCCAGTGGGTCGTGTTGAGACTGGCATTATAAAACCTGGCATGGTCGTCACCTTTGCCCCATCTGGACTGACAACTGAAGTCAAATCTGTTGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAATGTTGGGTTCAACGTGAAGAACGTCTCCGTGAAGGATCTCAAGCGTGGCTATGTTGCTTCAAATTCAAAGGATGATCCTGCCAAGGAAGCTGCCAACTTCACAGCTCAAGTTATCATCATGAACCATCCAGGACAAATCGGTAACGGTTACGCCCCTGTTCTCGACTGCCACACCTCCCACATTGCTGTCAAATTTGCCGAGATTTTGACCAAGATCGACAGGCGATCGGGTAAAGAACTCGAGAAAGAACCCAAGTTTTTGAAAAATGGTGATGCCGGATTCGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACCTTCGCCGAGTACCCTCCTCTAGGGCGCTTCGCCGTGAGGGACATGCGCCAAACTGTGGCCGTTGGTGTCATCAAGAGCGTTGAGAAGAAGGATCCAAGTGGCGCTAAGGTCACCAAATCTGCTGCTAAGAAAACTGGTAAATGA 1095 49.77 MSCSASSKPSAGPGSYQITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKTGK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23499968 23502341 + Sed0019005.1 Sed01g2821 702125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2821 364 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 241 344 IPR009001 -
Sed01g2821 364 PANTHER TRANSLATION FACTOR 18 342 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Sed01g2821 364 FunFam Elongation factor 1-alpha 144 231 - -
Sed01g2821 364 Pfam GTP-eEF1A C-terminal domain-like 242 342 IPR054696 -
Sed01g2821 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 164 IPR027417 -
Sed01g2821 364 Gene3D - 15 138 IPR027417 -
Sed01g2821 364 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 145 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2821 364 CDD EF1_alpha_III 238 341 - -
Sed01g2821 364 Gene3D Translation factors 238 345 - -
Sed01g2821 364 Pfam Elongation factor Tu domain 2 163 228 IPR004161 GO:0005525(InterPro)
Sed01g2821 364 FunFam Elongation factor 1-alpha 238 345 - -
Sed01g2821 364 Gene3D Translation factors 144 231 - -
Sed01g2821 364 Pfam Elongation factor Tu GTP binding domain 18 136 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2821 364 CDD EF1_alpha_II 145 235 - -
Sed01g2821 364 SUPERFAMILY Translation proteins 146 236 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2821 Sed-Chr1:23499968 Sed04g2076 Sed-Chr4:35072490 3.70E-190 dispersed
Sed01g2821 Sed-Chr1:23499968 Sed01g2822 Sed-Chr1:23512250 5.00E-195 tandem
Sed01g2821 Sed-Chr1:23499968 Sed03g0039 Sed-Chr3:284677 2.80E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2821 K03231 - csv:105434427 684.871