Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2822 ATGGGTAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGGCATGTTGACTCCGGGAAGTCGACCACGACTGGCCATTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCCTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAGCGTGAGCGTGGTATCACAATTGACATTGCGCTGTGGAAGTTTGAGACCACCAAATACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATTAAGAACATGATTACTGGTACTTCCCAGGCTGATTGTGCCGTTCTTATCATCGACTCCACTACGGGAGGTTTTGAAGCTGGGATTTCTAAGGATGGACAGACGCGTGAACATGCCCTTCTTGCTTTTACTCTTGGTGTCAAGCAAATGATATGCTGCTGCAACAAGATGGATGCTACTACTCCGAAGTACTCTAAGGCAAGGTACGATGAAATTGTGAAGGAAGTCTCATCCTATCTCAAGAAGGTTGGCTACAACCCAGAAAAAATTGCCTTTGTTCCCATCTCTGGATTTGAGGGTGACAACATGATCGAAAGATCCACCAACCTCGACTGGTACAAGGGCCCAACCCTTCTTGAGGCCCTCGACATGATCCAAGAGCCCAAGAGACCATCCGACAAGCCCCTCCGTCTGCCCCTTCAGGATGTCTACAAAATTGGGGGTATTGGAACTGTCCCAGTGGGTCGTGTGGAGACTGGTGTTATAAAACCCGGTATGGTCGTCACCTTTGCCCCATCTGGACTGACAACTGAAGTAAAATCTGTTGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAATGTCGGGTTCAACGTGAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGCTACGTTGCTTCAAATTCAAAGGATGATCCGGCCAAGGAAGCTGCCAATTTCACGGCACAAGTCATCATCATGAACCATCCAGGTCAAATTGGAAACGGTTATGCCCCTGTTCTCGACTGCCACACCTCCCACATTGCTGTCAAATTTGCCGAGATCTTGACAAAGATCGACAGGCGATCTGGTAAAGAGCTTGAGAAAGAACCCAAGTTCTTGAAAAATGGCGATGCAGGATTCGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACTTTCTCTGCCTATCCCCCACTCGGACGATTTGCCGTGAGGGACATGCGTCAGACAGTGGCTGTTGGTGTCATCAAGGCTGTTGAGAAGAAGGACCCGAGCGGTGCCAAGGTCACAAAATCCGCTGCAAAGAAATCAGGCAAGTGA 1350 48.3 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIAFVPISGFEGDNMIERSTNLDWYKGPTLLEALDMIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23512250 23514768 + Sed0025486.1 Sed01g2822 702126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2822 449 FunFam Elongation factor 1-alpha 323 430 - -
Sed01g2822 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Sed01g2822 449 CDD EF1_alpha 9 227 - -
Sed01g2822 449 Gene3D Translation factors 229 316 - -
Sed01g2822 449 FunFam Elongation factor 1-alpha 229 316 - -
Sed01g2822 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Sed01g2822 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Sed01g2822 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Sed01g2822 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Sed01g2822 449 CDD EF1_alpha_II 230 320 - -
Sed01g2822 449 CDD EF1_alpha_III 323 426 - -
Sed01g2822 449 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Sed01g2822 449 Gene3D Translation factors 323 430 - -
Sed01g2822 449 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Sed01g2822 449 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Sed01g2822 449 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2822 449 Gene3D - 1 226 IPR027417 -
Sed01g2822 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2822 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Sed01g2822 449 FunFam Elongation factor 1-alpha 1 226 - -
Sed01g2822 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2822 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2822 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2822 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g2822 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1753 Sed-Chr1:12733457 Sed01g2822 Sed-Chr1:23512250 3.20E-73 dispersed
Sed01g2822 Sed-Chr1:23512250 Sed04g2076 Sed-Chr4:35072490 5.00E-253 dispersed
Sed01g2821 Sed-Chr1:23499968 Sed01g2822 Sed-Chr1:23512250 5.00E-195 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2822 K03231 - csv:101220517 890.567