Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2833 ATGGCGGAGCACGGCTCGTTCTCGGCGAAGGACTACCACGATCCGCCGCCGGCGCCGCTCATCGACGGCGAGGAGGTTACGAAATGGTCGTTTTACAGAGCTTTGATCGCGGAGTTCATAGCGACTCTGCTTTTCCTGTACGTGACTGTGTTGACGGTGATCGGATACAAATCGCAGACGGATCCTTGCGGCGGCGTTGGGATTCTCGGCATTGCTTGGTCGTTTGGGGGAATGATCTTCGTTCTTGTTTACTGTACCGCTGGGATTTCAGGTGGCCATATAAACCCAGCGGTAACATTTGGGCTGCTGTTGGCCCGTAAGGTGTCACTGGTACGGGCCGTGATGTACATGACGGCCCAATGTTTAGGGGCCATTTGCGGAGTTGGGCTCGTGAAGGCCTTCCAAAAGGCCCACTTCCAGAAGTACGGCGGCGGGGCCAATGGGCTCGCCGACGGCTACACTGTCGGCGTCGGACTGGCGGCGGAAATCATCGGAACTTTTGTGCTGGTGTACACAGTGTTCTCTGCAACTGATCCCAAAAGAAGTGCAAGAGATTCTCACATTCCTGTTTTGGCTCCACTTCCAATTGGATTTGCAGTGTTCATGGTTCACTTGGCCACTATTCCAATCACTGGCACTGGAATCAACCCAGCAAGGAGCTTGGGATCTGCTGTTATTTTAAACCAGCAAAAAACTTGGAATAACCATTGGATATTTTGGGTTGGACCATTCATAGGAGCAGCAATTGCAGCTTTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGGTCATTTAGAAGCAACCCAAATGTGTGA 828 51.93 MAEHGSFSAKDYHDPPPAPLIDGEEVTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPCGGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMTAQCLGAICGVGLVKAFQKAHFQKYGGGANGLADGYTVGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVILNQQKTWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23648384 23653268 + Sed0011930.1 Sed01g2833 702137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2833 275 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 271 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Sed01g2833 275 FunFam Probable aquaporin PIP1-2 18 273 - -
Sed01g2833 275 Pfam Major intrinsic protein 25 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Sed01g2833 275 NCBIfam MIP family channel protein 37 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 Gene3D Glycerol uptake facilitator protein. 18 275 IPR023271 -
Sed01g2833 275 CDD MIP 33 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 PRINTS Major intrinsic protein family signature 237 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2833 275 SUPERFAMILY Aquaporin-like 25 259 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2833 Sed-Chr1:23648384 Sed06g2041 Sed-Chr6:44490237 2.30E-131 dispersed
Sed01g2833 Sed-Chr1:23648384 Sed14g0413 Sed-Chr14:4282412 1.90E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2833 K09872 - gmx:100815583 492.656