Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2838 ATGGCTTCCAACACCTTGATGAGCTGCGGCATCGCCGCCACCGCCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCTCCGCCGCCCTCCCCTTTCCCGGTGTCGCCGCCAATGCCTCCTCCCGCTTCTCGATGTCTGCCGAGTGGATGCCCGGCCAGCCCCGCCCGCCTTATCTCGACGGCTCTGCCCCCGGTGATTTTGGCTTTGACCCACTTCGGCTGGGAGAAGTGCCAGAGAATCTGGAGAGATTCAAGGAGTCTGAGCTTATCCATTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCATTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCCATTCCAGGAGGCCAAGCTACCTACTTGGGACAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTTCTTGCAATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAGGACTCGGAGAAGAAGAAGTACCCGGGAGGCGCTTTCGACCCATTGGGCTACTCGAAAGACCCTGTCAAGTTGAAGGAATACAAAGTCAAAGAGGTCAAAAATGGTCGGTTGGCATTGTTGGCTTTTGTTGGAATCTGTGTGCAACAATCTGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGACATCATCATTCCCCCATCGTTTTCGCCTTGA 747 55.02 MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPPSFSP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23826376 23828513 - Sed0005093.1 Sed01g2838 702142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2838 248 Gene3D Chlorophyll a/b binding protein domain 53 239 - -
Sed01g2838 248 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 9 237 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Sed01g2838 248 Pfam Chlorophyll A-B binding protein 59 213 IPR022796 -
Sed01g2838 248 FunFam Chlorophyll a-b binding protein, chloroplastic 53 239 - -
Sed01g2838 248 SUPERFAMILY Chlorophyll a-b binding protein 41 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2838 Sed-Chr1:23826376 Sed12g1695 Sed-Chr12:28189246 8.50E-37 dispersed
Sed01g2838 Sed-Chr1:23826376 Sed12g1956 Sed-Chr12:30606377 3.40E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2838 K08907 - csv:101211428 454.136