Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2847 ATGGCAGCTGCTCCATCTACAATCTCTTCTCTTGATAATATTGATTTCCAGAAGCTTCAAAATGGAAGTGATATTCGAGGTGTTGCTGTTGCTGGTGTTGAGGGGGAGCCCGTGAATCTTACTGAACTAGTTGCAGAAGCAATAGGAGCTGGCTTTGCTGCATGGTTGTTAGAAAAGAAAAAAACTGATGGTTCAAGACGCATGAGAATTTCTATTGGACACGATTCACGAATTTCAGCTAAAAATTTACAGGATGCAATTTCTCAAGGTATAGCTGGTGCGGGACTGGATGTTATTCAATATGGATTAGCTTCTACACCAGCTATGTTTAACAGCACTCTTACTGAAGATGAAGCAATTTTTTGTCCTGCTGATGGATCCATCATGATAACAGCAAGTCATTTGCCATTCAACAGGAATGGATTCAAATTTTTTACAAATGCTGGTGGGCTTGGGAAAGCTGACATTAAAGAAATTCTGGGGCGTGCTGCAGATTTATATAAAAATCTGAATAATACAGATGGTTTGATAAATTCAAGGGAGAAAGGTTCTGCAACAATAGAGCAGGTTGATTACATGAGTGTCTATGCATCTGATCTCGTGGAGGCAGTGCGTAAAGCTGCAGGAAATAAAGAAAAGCCCCTGGAAGGATTTCATATTGTCGTTGATGCTGGAAATGGAGCAGGAGGATTTTTTGCAGCAAAGGTGCTTGAACCACTTGGCGCAATCACTTCTGGTAGTCAGTTCTTGGAGCCAGATGGTTTATTTCCAAACCATATCCCAAATCCTGAGGACAAGACTGCAATGAAAGCTATAACAGAGGCTGTTCTTCAGAACAAAGCCGATTTAGGGATCATCTTTGACACAGATGTTGACAGATCTGCTGCTGTGGATTCTACTGGACGTGAGTTTAACCGGAATCGTCTAATTGCCTTGATGTCTGCTATTGTTCTCGAGGAGCATCCTGGAACAACTATTGTTACAGATAGTGTGACTTCTGATGGCCTAACCTTTTTTATAGAGAAAAAACTTGGGGGAAAGCATCACAGGTTCAAAAGAGGTTACAAAAATGTCATTGATGAAGCTATCCGTTTGAATTCTGTTGGCGAGGAGTCACATTTGGCTATTGAAACCAGTGGTCATGGAGCTCTCAAGGAGAATCATTGGCTTGACGATGGTGCATATCTCATGGTCAAAGTTCTGAACAAACTTGCATCTGCAAGAGCCTCAGGATTGGAAGGTGGAAGCCAAGTTTTGACCGATCTGGTGGATGGTTTACAAGAGCCTGCCGTTGCTGTAGAGTTGCGATTAAAAATAAATCAAAACCATCCAGACCTTCAAGGAGGACCCTTCCGTGATTATGGAGAAGCAGTGCTGAAACATGTTGAGAATCTTGTTGCTGCTGATCCCAAGCTTCAAAAAGCTCCTGTTAACTATGAAGGGGTTCGGGTTTCTGGATTTGGCGGGTGGTTCCTTTTGAGACTCTCATTGCACGATCCTGTACTTCCTCTGAACATTGAGGCACCAAGCCATGACGACGCCTTACGACTCGGCCTTGCAGTCCTAGCTGCTGTCAAGGAGTTCCCTGCTTTGGATACATCTTCACTAGACAAATTCGTTCAAGTATGA 1629 42.91 MAAAPSTISSLDNIDFQKLQNGSDIRGVAVAGVEGEPVNLTELVAEAIGAGFAAWLLEKKKTDGSRRMRISIGHDSRISAKNLQDAISQGIAGAGLDVIQYGLASTPAMFNSTLTEDEAIFCPADGSIMITASHLPFNRNGFKFFTNAGGLGKADIKEILGRAADLYKNLNNTDGLINSREKGSATIEQVDYMSVYASDLVEAVRKAAGNKEKPLEGFHIVVDAGNGAGGFFAAKVLEPLGAITSGSQFLEPDGLFPNHIPNPEDKTAMKAITEAVLQNKADLGIIFDTDVDRSAAVDSTGREFNRNRLIALMSAIVLEEHPGTTIVTDSVTSDGLTFFIEKKLGGKHHRFKRGYKNVIDEAIRLNSVGEESHLAIETSGHGALKENHWLDDGAYLMVKVLNKLASARASGLEGGSQVLTDLVDGLQEPAVAVELRLKINQNHPDLQGGPFRDYGEAVLKHVENLVAADPKLQKAPVNYEGVRVSGFGGWFLLRLSLHDPVLPLNIEAPSHDDALRLGLAVLAAVKEFPALDTSSLDKFVQV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23922130 23929662 - Sed0015272.3 Sed01g2847 702151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2847 542 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 20 162 IPR005844 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 306 407 IPR005846 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 SUPERFAMILY Phosphoglucomutase, C-terminal domain 472 527 IPR036900 GO:0016868(InterPro)
Sed01g2847 542 FunFam phosphomannomutase/phosphoglucomutase isoform X1 20 176 - -
Sed01g2847 542 PANTHER PHOSPHOHEXOSE MUTASE 10 541 IPR050060 GO:0004615(PANTHER)|GO:0009570(PANTHER)
Sed01g2847 542 Gene3D - 298 417 - -
Sed01g2847 542 CDD PMM_PGM 19 525 - -
Sed01g2847 542 Gene3D - 17 175 - -
Sed01g2847 542 SUPERFAMILY Phosphoglucomutase, first 3 domains 306 406 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 252 265 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 217 236 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 126 140 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 281 296 IPR005841 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 FunFam phosphomannomutase/phosphoglucomutase isoform X1 219 296 - -
Sed01g2847 542 SUPERFAMILY Phosphoglucomutase, first 3 domains 24 224 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 SUPERFAMILY Phosphoglucomutase, first 3 domains 197 302 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Sed01g2847 542 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 198 301 IPR005845 GO:0005975(InterPro)
Sed01g2847 542 FunFam Phosphomannomutase/phosphoglucomutase isoform B 298 420 - -
Sed01g2847 542 Gene3D - 219 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2847 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2845 Sed-Chr1:23922130 Sed01g2847 Sed-Chr1:23922130 1.2e-310 dispersed
Sed01g2847 Sed-Chr1:23922130 Sed04g3027 Sed-Chr4:41434517 3.70E-109 dispersed
Sed01g2846 Sed-Chr1:23922130 Sed01g2847 Sed-Chr1:23922130 1.5e-310 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006944 1 3 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 3 4 1 37