Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2849 ATGGATAGAGGAATGGATTCAGTGATAGAGCCAATGAGGAACCATGAGAAGTGTTTAGATTCTCAGCTTTGGCATGCCTGTGCTGGTGGGATGGTTCAAATGCCTTCCATTAACTCAAAGGTAGTCTACTTTCCCCAGGGCCACGCCGAGCATGCACAGGGGAATGGGAATGTTGATTTCGGGAATGCTCGGATACCTTCCCACATTATTTGCAGGGTGTCTGCCACTAAATATATGGCAGATCGTGAAACGGATGAGATTTTTATTAAGATAAGGTTGATTCCACTGAGTAACGATGATTTTGATTTGGACGATGACGATGAGCTTCTTGGCCACAATGAAATTAGGAATCAGGAAAAACCATCCTCCTTTGCAAAGACATTGACACAATCTGATGCAAACAATGGCGGAGGGTTCTCTGTGCCCCGTTATTGTGCCGAGACAATCTTTCCTCGGTTGGATTACTCTGCAGAGCCTCCTGTTCAGACCCTTCTTGCCAGGGATGTTCATGGTGAGGTTTGGAGGTTTAGGCATATTTACAGAGGGACTCCCCGTCGCCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTTGCCGGAGACTCGATTGTTTTCCTGAGGGCAGAAACTGGTGATCTTTGTCTTGGAGTTAGGCGAGCCAAGAGGGGACTTGGTTGTGGAATTGATTACTCACCTGGGTGGAACCCAACAAATTCAGGCTCTCCACTTGTGGGGTATTCTGATTTCATGAGGGATAATGAAGGTAGATTTGTAAGAGGAAACTCAAATGCGAATCTGAATGGGAAAGTGAAGATCGAATCTGTGATTGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCCTTTGAGATTGTGTACTATCCATGTGCTGGTACTCCAGAGTTCGTTGTTAGATCCTCTACTGTAAGAACTGCAATGCAAATTCAATGGTATCCTGCTATGAGGTTTAAGATGCCTTTCGAAACCGAGGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTTCTATCCAGTTAGCTGATCCTCGATGGCCTGATTCTCCATGGCGAATGCTGCAGGTGGCATGGGATGAACCAGATTTACTACAAAATGTGAAAAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAACATGCCAGCTATCCACGTCTCACCCTTCTCGCCACCGAGAAAGAAGCAACGGTTTCCGTTTTCGGCAGAAACTTCTGTATTTAGTCACTTTCCAATGCCATCATTCTCCACCCATTTCTTCGATGCAACCAACCCATTCCAAAGCATTATAGCTAATAACATTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTCTCTTCATCCAACCTCCAAATTAGCAAACCGCCTTCGGGACAATTTTCCGCTGGTCTTAAGCACCTCGATGGTGCTACTCCTCTTCCTAGCATCCGCGGCGAGGATCTTTTTGGAGGCATTAAAAACCCTGATAATATTCCTCATTGGCTAACAGTGGGCAATCACACCCAAAGCTCAAAAGAAATCAAAGAAACACAACCAGCTCATATCATGTTGTTTGGCCAAATCATTCTTCTTAATCGACAGAATTCTACCAGCTCCTCGGCAGATATGACGAATGCATCCGATGCAAATCTAGAGAAAGCATCAAATCCTTCGGATGGTTCTGGTTTGTCATCACAGCAGAATGGGTCATTGGAGAATTCATCAGATGGAGCATCTACCTCGTACAACGGTCCAGAAAAAACTGGTCTTAGCTTGGACACTGGTCCTTGCCAGGTGCTTATGGAGTTCGAGAATGTCAGTCGTACTCTTGATCTATCGGTCCTTGGATCATACGAAGAATTGTATAGAAAGCTTGGCAATATGTTTGGTGTAGGAAGCTCAGGGATGCTAAATTCTGTTATTTATCAGGATGCTCTTGGTGCTATAAGGCATCCTGGAGAGGAGCCTTTCAGTGAGTTTATGAAGACGGCTAGAAGGCTAACTATACTTGCAGATCCTCGAAGTCGCACAACATTAGTTAGATAG 2064 45.11 MDRGMDSVIEPMRNHEKCLDSQLWHACAGGMVQMPSINSKVVYFPQGHAEHAQGNGNVDFGNARIPSHIICRVSATKYMADRETDEIFIKIRLIPLSNDDFDLDDDDELLGHNEIRNQEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTLLARDVHGEVWRFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCLGVRRAKRGLGCGIDYSPGWNPTNSGSPLVGYSDFMRDNEGRFVRGNSNANLNGKVKIESVIEAAMLAASGKPFEIVYYPCAGTPEFVVRSSTVRTAMQIQWYPAMRFKMPFETEDSSRISWFMGTISSIQLADPRWPDSPWRMLQVAWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKQRFPFSAETSVFSHFPMPSFSTHFFDATNPFQSIIANNIPAGIQGARHAQFGLSSSNLQISKPPSGQFSAGLKHLDGATPLPSIRGEDLFGGIKNPDNIPHWLTVGNHTQSSKEIKETQPAHIMLFGQIILLNRQNSTSSSADMTNASDANLEKASNPSDGSGLSSQQNGSLENSSDGASTSYNGPEKTGLSLDTGPCQVLMEFENVSRTLDLSVLGSYEELYRKLGNMFGVGSSGMLNSVIYQDALGAIRHPGEEPFSEFMKTARRLTILADPRSRTTLVR 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23945631 23949503 - Sed0023901.1 Sed01g2849 702153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2849 687 MobiDBLite consensus disorder prediction 544 596 - -
Sed01g2849 687 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677(InterPro)
Sed01g2849 687 Gene3D - 322 392 - -
Sed01g2849 687 FunFam Auxin response factor 122 226 - -
Sed01g2849 687 SMART B3_2 124 226 IPR003340 GO:0003677(InterPro)
Sed01g2849 687 Pfam Auxin response factor 283 365 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g2849 687 ProSiteProfiles PB1 domain profile. 600 680 IPR053793 -
Sed01g2849 687 FunFam Auxin response factor 321 393 - -
Sed01g2849 687 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677(InterPro)
Sed01g2849 687 CDD B3_DNA 123 224 IPR003340 GO:0003677(InterPro)
Sed01g2849 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 678 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g2849 687 Gene3D - 122 226 IPR015300 -
Sed01g2849 687 Gene3D - 600 682 - -
Sed01g2849 687 SUPERFAMILY DNA-binding pseudobarrel domain 112 225 IPR015300 -
Sed01g2849 687 MobiDBLite consensus disorder prediction 544 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2849 Sed-Chr1:23945631 Sed05g2845 Sed-Chr5:39588931 7.00E-198 dispersed
Sed03g0699 Sed-Chr3:4199364 Sed01g2849 Sed-Chr1:23945631 1.40E-282 transposed
Sed04g0120 Sed-Chr4:751296 Sed01g2849 Sed-Chr1:23945631 5.20E-95 transposed
Sed01g2849 Sed-Chr1:23945631 Sed14g0406 Sed-Chr14:4240115 5.50E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37323 PF02362 B3 1.30E-20 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2849 K14486 - csv:101204568 1075.85