Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2860 ATGGCTGTAACAGCTCCAGGGAAGCTCAACGTTAACGAGTCCCCTTCATGGGGATCTAGAAGTGTCGATTGCTTCGAAAAATTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTGAAAACTGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTGCATCATGAAAATGTAATAAATTTGAAAGAAATTGTGACATCTCCAGGTCCCGAGAAGGATGAACAAGGGAAGCCAGATGGTAACAAGTACAAAGGTGGCATTTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGGTGATCGTCCAGGGATGAGGTTTTCTGTTCCTCAAATAAAGTGCTACATGAAGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGATAACGAAGGAAATCTGAAGCTTGCTGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGCGTCATTACCCTATGGTATAGACCTCCTGAATTGCTGCTTGGGTCAACAAAGTATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTTCCTGGCAAGGATGAGCCGGAGCAGTTAAACAAGATCTTTGAGTTATGTGGTGCCCCTGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCAGACATTTTGATCGTCACGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCAGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAGAGTTTGCCCAAGTATGAAGCATCACACGAGTTCCAGACGAAGAAGAAGCGTCAACAGCAGCGACAGCAAGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAACATACACGCCTTCCACCTATTCAGCAGTCGGGCCAAGCTCACGCACAGATGCGAGCGGTGCCTAACCAACCTATTCATGGTTCTCAACCGCCCGTTGCTGCAGGACCTAGCCACCATTTTGGGGGGAAGCCTCGTGGGCCACCAGGTCCTGGTAGATATCCTTCAGGTGGAAATCCTCCTTCTGGATACAACCACCCAAGTCGTGGGGGTCAAGGTGGGGGTGGCTATGGCAATGCACAATATGCTCAAGGACGAGCTGCTGCACCTTATGGATCTGGTAACATGTCTGGTGCTGGTCCTCGAGGCGGAGGTGGCGGTGGTGGAGGTTATGGCGTCGGAGCTCCAAATTACCCACAAAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATACAATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAATGA 1557 46.56 MAVTAPGKLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVINLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLGDRPGMRFSVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQQEETAKRQKLQHPQHTRLPPIQQSGQAHAQMRAVPNQPIHGSQPPVAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNAQYAQGRAAAPYGSGNMSGAGPRGGGGGGGGYGVGAPNYPQNGPYAGSSGTGRGSNTMGGNRNQQYGWQQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24091676 24109299 - Sed0008748.1 Sed01g2860 702164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2860 518 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Sed01g2860 518 MobiDBLite consensus disorder prediction 335 518 - -
Sed01g2860 518 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2860 518 SMART serkin_6 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2860 518 MobiDBLite consensus disorder prediction 337 366 - -
Sed01g2860 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2860 518 FunFam Cyclin-dependent kinase C-2 122 364 - -
Sed01g2860 518 MobiDBLite consensus disorder prediction 490 518 - -
Sed01g2860 518 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2860 518 CDD STKc_CDK9_like 25 324 - -
Sed01g2860 518 MobiDBLite consensus disorder prediction 371 387 - -
Sed01g2860 518 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Sed01g2860 518 PANTHER CELL DIVISION PROTEIN KINASE 25 324 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed01g2860 518 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Sed01g2860 518 FunFam Cyclin-dependent kinase C-2 12 121 - -
Sed01g2860 518 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2860 Sed-Chr1:24091676 Sed03g0603 Sed-Chr3:3642509 5.80E-237 dispersed
Sed01g2860 Sed-Chr1:24091676 Sed03g0602 Sed-Chr3:3642509 4.10E-259 wgd
Sed01g2860 Sed-Chr1:24091676 Sed07g2203 Sed-Chr7:37762748 2.40E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78684 PF00069 Pkinase 1.50E-74 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2860 K08819 - csv:101220936 923.309