Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2860 | ATGGCTGTAACAGCTCCAGGGAAGCTCAACGTTAACGAGTCCCCTTCATGGGGATCTAGAAGTGTCGATTGCTTCGAAAAATTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTGAAAACTGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTGCATCATGAAAATGTAATAAATTTGAAAGAAATTGTGACATCTCCAGGTCCCGAGAAGGATGAACAAGGGAAGCCAGATGGTAACAAGTACAAAGGTGGCATTTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGGTGATCGTCCAGGGATGAGGTTTTCTGTTCCTCAAATAAAGTGCTACATGAAGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGATAACGAAGGAAATCTGAAGCTTGCTGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGCGTCATTACCCTATGGTATAGACCTCCTGAATTGCTGCTTGGGTCAACAAAGTATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTTCCTGGCAAGGATGAGCCGGAGCAGTTAAACAAGATCTTTGAGTTATGTGGTGCCCCTGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCAGACATTTTGATCGTCACGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCAGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAGAGTTTGCCCAAGTATGAAGCATCACACGAGTTCCAGACGAAGAAGAAGCGTCAACAGCAGCGACAGCAAGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAACATACACGCCTTCCACCTATTCAGCAGTCGGGCCAAGCTCACGCACAGATGCGAGCGGTGCCTAACCAACCTATTCATGGTTCTCAACCGCCCGTTGCTGCAGGACCTAGCCACCATTTTGGGGGGAAGCCTCGTGGGCCACCAGGTCCTGGTAGATATCCTTCAGGTGGAAATCCTCCTTCTGGATACAACCACCCAAGTCGTGGGGGTCAAGGTGGGGGTGGCTATGGCAATGCACAATATGCTCAAGGACGAGCTGCTGCACCTTATGGATCTGGTAACATGTCTGGTGCTGGTCCTCGAGGCGGAGGTGGCGGTGGTGGAGGTTATGGCGTCGGAGCTCCAAATTACCCACAAAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATACAATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAATGA | 1557 | 46.56 | MAVTAPGKLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVINLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLGDRPGMRFSVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQQEETAKRQKLQHPQHTRLPPIQQSGQAHAQMRAVPNQPIHGSQPPVAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNAQYAQGRAAAPYGSGNMSGAGPRGGGGGGGGYGVGAPNYPQNGPYAGSSGTGRGSNTMGGNRNQQYGWQQ | 518 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24091676 | 24109299 | - | Sed0008748.1 | Sed01g2860 | 702164 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2860 | 518 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524(InterPro) | |
Sed01g2860 | 518 | MobiDBLite | consensus disorder prediction | 335 | 518 | - | - | |
Sed01g2860 | 518 | ProSiteProfiles | Protein kinase domain profile. | 25 | 324 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2860 | 518 | SMART | serkin_6 | 25 | 324 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2860 | 518 | MobiDBLite | consensus disorder prediction | 337 | 366 | - | - | |
Sed01g2860 | 518 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g2860 | 518 | FunFam | Cyclin-dependent kinase C-2 | 122 | 364 | - | - | |
Sed01g2860 | 518 | MobiDBLite | consensus disorder prediction | 490 | 518 | - | - | |
Sed01g2860 | 518 | Pfam | Protein kinase domain | 25 | 324 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2860 | 518 | CDD | STKc_CDK9_like | 25 | 324 | - | - | |
Sed01g2860 | 518 | MobiDBLite | consensus disorder prediction | 371 | 387 | - | - | |
Sed01g2860 | 518 | Gene3D | Transferase(Phosphotransferase) domain 1 | 122 | 364 | - | - | |
Sed01g2860 | 518 | PANTHER | CELL DIVISION PROTEIN KINASE | 25 | 324 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed01g2860 | 518 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 121 | - | - | |
Sed01g2860 | 518 | FunFam | Cyclin-dependent kinase C-2 | 12 | 121 | - | - | |
Sed01g2860 | 518 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 332 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2860 | Sed-Chr1:24091676 | Sed03g0603 | Sed-Chr3:3642509 | 5.80E-237 | dispersed | |
Sed01g2860 | Sed-Chr1:24091676 | Sed03g0602 | Sed-Chr3:3642509 | 4.10E-259 | wgd | |
Sed01g2860 | Sed-Chr1:24091676 | Sed07g2203 | Sed-Chr7:37762748 | 2.40E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78684 | PF00069 | Pkinase | 1.50E-74 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2860 | K08819 | - | csv:101220936 | 923.309 |