Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2862 ATGGCAGCGCCGAAGCCTCGCTCCACTCGGTCCGTATCTCGCAGGGAAGTCTCCGATTCGGAGAAGATGGACGGTGCTTACAGTTGGGACGCCCTTGAATGGACCAAGATTGAGCGCATTCCGCAGTCCGTATCGCATGTGAATTTGGATTGTTTGCTTGAAGCCGAACAAGTGATTGCCGAGGGCTACGGTGTCGTTCTTGTGAATACTGATGAGGCGGGTACCTTATTTGTAACCAATTTTCGTCTCTTATTTCTAAGTGAAGGAAGCATGGATGTTATTGCCTTTGGCACTATCCCGTTGGCAACAATTGATAAATTCAACAAAATAGTTGTGAAGACAAACCCTGTCTCTCGCCAGTCTGAAAAGTCTTCATCTCGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGGCCAAGAACAAAGCAGAGGCGTAAAGTATATGATGCATTATTGAGGTGTATGAAACCTGCAAGAATATGGGATCTATATGCATTCAAGTCCGGGCCATCCAAGTACAGTAATACAGACCCAAAAGTTCGCTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACGTGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCAAATGAATTGTGGAGAATAACTAACATCAATTCCAGTTATACTTTGTGTCAAAGTTATCCATTCGCATTAGTTGTTCCAAAACACATTAGTGATGAAGAAATGTTGCAGGCTTCTACCTTTCGTGCTAGATGTCGGTTGCCTGTTCTTTCGTGGTGCAATCCTGGTACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTACTACTGATGAAAAGCTTGTTGCTGCGCTTTGCTCAGATCTTGCTGGCGTTCAAGGGTCATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGCTCAGAATCTTCATCAAATTATTTTCAATCTGAGATAGTTTTTTTTGGGATTGACAACATACATGCAATGAGAGAAAGTCTAACTCGGCTTAGAGAATACTTGGATACTCATGGTGAAAAATCATCTGACGGGATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGAGGTAATCTTAGTAGCATGTCTGCATCGGTATCAACTCTGGGAGATAGTGGCTGGTTAATCCATGTTCAAAGCGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGCTGCTTTGGAAAAAGCAACTGTGCTAGTTCATTGCAGTGATGGCTGGGACAGAACAACACAACTAGTTTCATTAGCTAGCTTACTGCTTGATCCTTATTATCGGACGTTCACTGGATTTCAGGCCCTTGTTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCACACCAACCATATCAGGAAGTGGTAACATGCCACATGAACTTTCTAGGCAGTCTTCATCTGGAAGTTTATCTTCTTCACCTGTGCGTCAGCCATCGGGATCATTCACATCTCAAGCTTCCAGTCCTTCTCATGCACAGACCTCGAACAACTGTTCTCCCATATTCTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCTTTTGCTTTTGAGTTCTCTTCGGCATTCCTTGTGGATCTCTTGGATTGTATGCTTTCCTGTCGCTTTGGAAACTTCTTGTGCAATTGTGAGAAGGAGCGGCAGCAATGTACAGTTTCTGAAGTTTGTGGCTGTCTGTGGGCGTATTTGGCTGATTTACGAGGGTCGGAAGGAAGTTCACACGTGCATTACAACCTCTTTTATGATCCAACCGAACATGATGGTCCTCTCTTACCTCCTGCTGCATCTCTGGCTCCAACTCTCTGGCCACAGTTCCATTTTCGTTGGGCTTGTCCTAAAGAATCCCAAGCTGGGGAACTTGAAGCGAGATGCAGGAAAATGTCTAAAAAGTTCTCTGAAATGCAAAAGGATAAAGCAGTAGCAGAGAGAGAAGCCGCAGAGACGGCGGCTGCCGTGGAATCATTAAAAGCAGAGTTGCTAAACGAGAAACAATCAAGTATATCTGCTATGAGTTTAGCAAAAAGTGCAAGCAAAGAATGTGGAGCCTTAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGTTATTGTACAATTGACATTGAGGGAGACCAGATGAAATCCAATCTGAAAAGCTGCCCAGCTTCAAGAAGGGCTTCACATCGTTCTCTCCCTGTTAGTGAAGAGAGTGATACCTCCCTTTCTATCGCAGTTACAGAAGACGATGCCCCAAGCTACCCTCTCAGTCACATATGTGAAGCTCTATGCCCGTTGCGCACCCGGGATGGAGGGTGCCGGTGGCCCGATGCTGGTTGTGCTCATTTGGGTAGCCAATTTATTGGACTAAAGGCAAACTACGATGCATTTGATCAACTATCCATATACGATGGTTACTTCAAGCCAGAATGA 2565 44.41 MAAPKPRSTRSVSRREVSDSEKMDGAYSWDALEWTKIERIPQSVSHVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGSMDVIAFGTIPLATIDKFNKIVVKTNPVSRQSEKSSSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFKSGPSKYSNTDPKVRLLNEYFRLLGKGSLRASMSMIEDGSFTLSNELWRITNINSSYTLCQSYPFALVVPKHISDEEMLQASTFRARCRLPVLSWCNPGTGAVLARSSQPLVGLMMNMRSTTDEKLVAALCSDLAGVQGSSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARAALEKATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRSGTPTISGSGNMPHELSRQSSSGSLSSSPVRQPSGSFTSQASSPSHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCTVSEVCGCLWAYLADLRGSEGSSHVHYNLFYDPTEHDGPLLPPAASLAPTLWPQFHFRWACPKESQAGELEARCRKMSKKFSEMQKDKAVAEREAAETAAAVESLKAELLNEKQSSISAMSLAKSASKECGALKRAIQSLGCKVQVSSNGYCTIDIEGDQMKSNLKSCPASRRASHRSLPVSEESDTSLSIAVTEDDAPSYPLSHICEALCPLRTRDGGCRWPDAGCAHLGSQFIGLKANYDAFDQLSIYDGYFKPE 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24152132 24171525 + Sed0024945.1 Sed01g2862 702166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2862 854 Gene3D - 63 162 IPR011993 -
Sed01g2862 854 Coils Coil 664 705 - -
Sed01g2862 854 PANTHER MYOTUBULARIN-RELATED 17 788 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Sed01g2862 854 Pfam Myotubularin-like phosphatase domain 215 595 IPR010569 -
Sed01g2862 854 ProSitePatterns Tyrosine specific protein phosphatases active site. 441 451 IPR016130 GO:0016311(InterPro)
Sed01g2862 854 CDD PTP-MTM-like 261 555 - -
Sed01g2862 854 MobiDBLite consensus disorder prediction 493 537 - -
Sed01g2862 854 SMART gram2001c 45 111 IPR004182 -
Sed01g2862 854 SUPERFAMILY PH domain-like 51 174 - -
Sed01g2862 854 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 657 IPR029021 -
Sed01g2862 854 ProSiteProfiles Myotubularin phosphatase domain. 198 653 IPR010569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2862 Sed-Chr1:24152132 Sed01g2863 Sed-Chr1:24152132 0.00E+00 tandem
Sed01g2862 Sed-Chr1:24152132 Sed03g0609 Sed-Chr3:3675532 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2862 K18081 - csv:101204839 1499.18