Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2863 ATGGATGTTATTGCCTTTGGCACTATCCCGTTGGCAACAATTGATAAATTCAACAAAATAGTTGTGAAGACAAACCCTGTCTCTCGCCAGTCTGAAAAGTCTTCATCTCGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGGCCAAGAACAAAGCAGAGGCGTAAAGTATATGATGCATTATTGAGGTGTATGAAACCTGCAAGAATATGGGATCTATATGCATTCAAGTCCGGGCCATCCAAGTACAGTAATACAGACCCAAAAGTTCGCTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACGTGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCAAATGAATTGTGGAGAATAACTAACATCAATTCCAGTTATACTTTGTGTCAAAGTTATCCATTCGCATTAGTTGTTCCAAAACACATTAGTGATGAAGAAATGTTGCAGGCTTCTACCTTTCGTGCTAGATGTCGGTTGCCTGTTCTTTCGTGGTGCAATCCTGGTACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTACTACTGATGAAAAGCTTGTTGCTGCGCTTTGCTCAGATCTTGCTGGCGTTCAAGGGTCATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGCTCAGAATCTTCATCAAATTATTTTCAATCTGAGATAGTTTTTTTTGGGATTGACAACATACATGCAATGAGAGAAAGTCTAACTCGGCTTAGAGAATACTTGGATACTCATGGTGAAAAATCATCTGACGGGATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGAGGTAATCTTAGTAGCATGTCTGCATCGGTATCAACTCTGGGAGATAGTGGCTGGTTAATCCATGTTCAAAGCGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGCTGCTTTGGAAAAAGCAACTGTGCTAGTTCATTGCAGTGATGGCTGGGACAGAACAACACAACTAGTTTCATTAGCTAGCTTACTGCTTGATCCTTATTATCGGACGTTCACTGGATTTCAGGCCCTTGTTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCACACCAACCATATCAGGAAGTGGTAACATGCCACATGAACTTTCTAGGCAGTCTTCATCTGGAAGTTTATCTTCTTCACCTGTGCGTCAGCCATCGGGATCATTCACATCTCAAGCTTCCAGTCCTTCTCATGCACAGACCTCGAACAACTGTTCTCCCATATTCTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCTTTTGCTTTTGAGTTCTCTTCGGCATTCCTTGTGGATCTCTTGGATTGTATGCTTTCCTGTCGCTTTGGAAACTTCTTGTGCAATTGTGAGAAGGAGCGGCAGCAATGTACAGTTTCTGAAGTTTGTGGCTGTCTGTGGGCGTATTTGGCTGATTTACGAGGGTCGGAAGGAAGTTCACACGTGCATTACAACCTCTTTTATGATCCAACCGAACATGATGGTCCTCTCTTACCTCCTGCTGCATCTCTGGCTCCAACTCTCTGGCCACAGTTCCATTTTCGTTGGGCTTGTCCTAAAGAATCCCAAGCTGGGGAACTTGAAGCGAGATGCAGGAAAATGTCTAAAAAGTTCTCTGAAATGCAAAAGGATAAAGCAGTAGCAGAGAGAGAAGCCGCAGAGACGGCGGCTGCCGTGGAATCATTAAAAGCAGAGTTGCTAAACGAGAAACAATCAAGTATATCTGCTATGAGTTTAGCAAAAAGTGCAAGCAAAGAATGTGGAGCCTTAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGTTATTGTACAATTGACATTGAGGGAGACCAGATGAAATCCAATCTGAAAAGCTGCCCAGCTTCAAGAAGGGCTTCACATCGTTCTCTCCCTGTTAGTGAAGAGAGTGATACCTCCCTTTCTATCGCAGTTACAGAAGACGATGCCCCAAGCTACCCTCTCAGTCACATATGTGAAGCTCTATGCCCGTTGCGCACCCGGGATGGAGGGTGCCGGTGGCCCGATGCTGGTTGTGCTCATTTGGGTAGCCAATTTATTGGACTAAAGGCAAACTACGATGCATTTGATCAACTATCCATATACGATGGTTACTTCAAGCCAGAATGA 2295 43.66 MDVIAFGTIPLATIDKFNKIVVKTNPVSRQSEKSSSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFKSGPSKYSNTDPKVRLLNEYFRLLGKGSLRASMSMIEDGSFTLSNELWRITNINSSYTLCQSYPFALVVPKHISDEEMLQASTFRARCRLPVLSWCNPGTGAVLARSSQPLVGLMMNMRSTTDEKLVAALCSDLAGVQGSSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARAALEKATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRSGTPTISGSGNMPHELSRQSSSGSLSSSPVRQPSGSFTSQASSPSHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCTVSEVCGCLWAYLADLRGSEGSSHVHYNLFYDPTEHDGPLLPPAASLAPTLWPQFHFRWACPKESQAGELEARCRKMSKKFSEMQKDKAVAEREAAETAAAVESLKAELLNEKQSSISAMSLAKSASKECGALKRAIQSLGCKVQVSSNGYCTIDIEGDQMKSNLKSCPASRRASHRSLPVSEESDTSLSIAVTEDDAPSYPLSHICEALCPLRTRDGGCRWPDAGCAHLGSQFIGLKANYDAFDQLSIYDGYFKPE 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24152132 24171525 + Sed0024945.2 Sed01g2863 702167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2863 764 ProSiteProfiles Myotubularin phosphatase domain. 108 563 IPR010569 -
Sed01g2863 764 PANTHER MYOTUBULARIN-RELATED 6 698 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Sed01g2863 764 ProSitePatterns Tyrosine specific protein phosphatases active site. 351 361 IPR016130 GO:0016311(InterPro)
Sed01g2863 764 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 125 567 IPR029021 -
Sed01g2863 764 Coils Coil 574 615 - -
Sed01g2863 764 Pfam Myotubularin-like phosphatase domain 125 505 IPR010569 -
Sed01g2863 764 CDD PTP-MTM-like 171 465 - -
Sed01g2863 764 SUPERFAMILY PH domain-like 8 84 - -
Sed01g2863 764 MobiDBLite consensus disorder prediction 403 447 - -
Sed01g2863 764 Gene3D - 2 72 IPR011993 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2863 Sed-Chr1:24152132 Sed03g0609 Sed-Chr3:3675532 0.00E+00 dispersed
Sed01g2862 Sed-Chr1:24152132 Sed01g2863 Sed-Chr1:24152132 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2863 K18081 - csv:101204839 1357.04