Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2881 | ATGTTTGCAACCACTGCCATTATGTTTTTCATTTGGCTCTTGAGCTACTCCCTGCCATCCATGGCAGCTTACCATTTCAATCTCACTGTCCCACATCTTCTTCCAGATCCTGAAACTGTGGCCTATGAACTTCAGAGGAGTGTGAACAATTCATTTTCCAGAAGACAAATGCAATCTATCAACAGCTCAAAAGAGCAATCAAATTCATGCCAAACCGGAAACCCAATCGACGATTGTTGGCGCTGCGAAACAAACTGGCAAGCGAATCGGCAACGCCTGGCCGAATGCGGCATCGGGTTCGGCCGAGACGCCATGGGAGGCAAAGGAGGTCAGATCTACATTGTCACAGATTCCTCCGATCCCGACCCGGTAAGCCCCCGCCCGGGAACACTCCGCTACGCCGTGGTTCAAGACGAACCCCTCTGGATCATCTTCTCCGCAGACATGACCATCAAACTCAAATACGAGCTCATGATCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAACGTCCACATAACCGGCGGCGGCTGCATCACCTTACAGTACATCTCGAACGTGATCATCCACAACATCAACATCCATCACTGCATCCCCACCGGCCACACCAACGTCCGATCCAGCCCCACGCACGTCGGATACAGGGGAAAATCCGACGGCGACGGGATCTCGATCTTCAGTTCCCGCAACGTCTGGATCGACCATTGCTCGTTGTCGTACTGTACGGACGGGTTGATCGACGCGATAATGGGATCCACCGGGATCACGATCTCGAACAGCTACTTCTCGCACCACGACGAGGTGATGCTGTTGGGGCACGACGACGGGTTCTCGCCGGACTCCGGGATGCAGGTCACGATTGCGTTTAACCTGTTTGGGGAGAAGCTGGTTCAGAGGATGCCGCGGTGCCGGCGGGGGTATATTCACGTCGTGAATAACGAATTCCGGTCGTGGGAGATGTACGCCATCGGCGGTAGCGGTGGTCCGACGATCAACAGTCAAGGGAATCGCTATATTGCTCCCGGAAATCCTAATGCCAAGGAGGTAACGAAGCGCGTGGACACAAACGCGGGGGACTGGTCGGAGTGGAACTGGAGGACGGAAGGGGACATAATGGTAAATGGAGCATTTTTCGTGCCCTCCGGCGAAGGGCTCACCAATATGTACCTCAAAGCTTCCAGCCTCGCGCCCAAGTCCGCCGCTCTCGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGTGGCCCCAGGGAGAGTAGGCAGAGCTACACCTATCCAGGAGACGAAACCTCCTCCAGTTCAGGGTCAAGTGGGAGCGATGGTGGTGGCGACTACTTTGGGATGATCTTCGGCGGGGGTGGGGGCGGGGTGAACGGTGCACCACTGCCATCACTTTCAGTTGTTGACATGATCATTCTAACCCAGCTTATTATTTTCGTTCTGTATACAAACTCAATCTATGATGCTTTTTTATCATTGACAATATTGTAG | 1494 | 54.22 | MFATTAIMFFIWLLSYSLPSMAAYHFNLTVPHLLPDPETVAYELQRSVNNSFSRRQMQSINSSKEQSNSCQTGNPIDDCWRCETNWQANRQRLAECGIGFGRDAMGGKGGQIYIVTDSSDPDPVSPRPGTLRYAVVQDEPLWIIFSADMTIKLKYELMINSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNVWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDGFSPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLTNMYLKASSLAPKSAALVDQLTLNAGVFGGPRESRQSYTYPGDETSSSSGSSGSDGGGDYFGMIFGGGGGGVNGAPLPSLSVVDMIILTQLIIFVLYTNSIYDAFLSLTIL | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24487977 | 24493445 | + | Sed0021437.1 | Sed01g2881 | 702185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2881 | 497 | Pfam | Pectate lyase | 155 | 325 | IPR002022 | - | |
Sed01g2881 | 497 | SUPERFAMILY | Pectin lyase-like | 74 | 413 | IPR011050 | - | |
Sed01g2881 | 497 | Gene3D | - | 73 | 415 | IPR012334 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 96 | 113 | IPR018082 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 300 | 319 | IPR018082 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 393 | 416 | IPR018082 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 156 | 172 | IPR018082 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 120 | 145 | IPR018082 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 322 | 341 | IPR018082 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 364 | 388 | IPR018082 | - | |
Sed01g2881 | 497 | PRINTS | Pollen allergen Amb family signature | 220 | 241 | IPR018082 | - | |
Sed01g2881 | 497 | MobiDBLite | consensus disorder prediction | 424 | 440 | - | - | |
Sed01g2881 | 497 | SMART | amb_all | 148 | 345 | IPR002022 | - | |
Sed01g2881 | 497 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 414 | IPR045032 | GO:0030570(InterPro) | |
Sed01g2881 | 497 | MobiDBLite | consensus disorder prediction | 420 | 440 | - | - | |
Sed01g2881 | 497 | FunFam | Pectate lyase | 73 | 415 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2881 | Sed-Chr1:24487977 | Sed06g2021 | Sed-Chr6:44316771 | 2.60E-186 | dispersed | |
Sed01g2881 | Sed-Chr1:24487977 | Sed01g2882 | Sed-Chr1:24487977 | 9.20E-208 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2881 | K01728 | - | csv:101207535 | 813.527 |