Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2882 ATGTTTGCAACCACTGCCATTATGTTTTTCATTTGGCTCTTGAGCTACTCCCTGCCATCCATGGCAGCTTACCATTTCAATCTCACTGTCCCACATCTTCTTCCAGATCCTGAAACTGTGGCCTATGAACTTCAGAGGAGTGTGAACAATTCATTTTCCAGAAGACAAATGCAATCTATCAACAGCTCAAAAGAGCAATCAAATTCATGCCAAACCGGAAACCCAATCGACGATTGTTGGCGCTGCGAAACAAACTGGCAAGCGAATCGGCAACGCCTGGCCGAATGCGGCATCGGGTTCGGCCGAGACGCCATGGGAGGCAAAGGAGGTCAGATCTACATTGTCACAGATTCCTCCGATCCCGACCCGGTAAGCCCCCGCCCGGGAACACTCCGCTACGCCGTGGTTCAAGACGAACCCCTCTGGATCATCTTCTCCGCAGACATGACCATCAAACTCAAATACGAGCTCATGATCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAACGTCCACATAACCGGCGGCGGCTGCATCACCTTACAGTACATCTCGAACGTGATCATCCACAACATCAACATCCATCACTGCATCCCCACCGGCCACACCAACGTCCGATCCAGCCCCACGCACGTCGGATACAGGGGAAAATCCGACGGCGACGGGATCTCGATCTTCAGTTCCCGCAACGTCTGGATCGACCATTGCTCGTTGTCGTACTGTACGGACGGGTTGATCGACGCGATAATGGGATCCACCGGGATCACGATCTCGAACAGCTACTTCTCGCACCACGACGAGGTGATGCTGTTGGGGCACGACGACGGGTTCTCGCCGGACTCCGGGATGCAGGTCACGATTGCGTTTAACCTGTTTGGGGAGAAGCTGGTTCAGAGGATGCCGCGGTGCCGGCGGGGGTATATTCACGTCGTGAATAACGAATTCCGGTCGTGGGAGATGTACGCCATCGGCGGTAGCGGTGGTCCGACGATCAACAGTCAAGGGAATCGCTATATTGCTCCCGGAAATCCTAATGCCAAGGAGGTATGCTTTACGCTTTGGCCGTCTTTTCTTCACTCTGTTTTACACTTCGCCGGCGCGTGTTGA 1110 54.05 MFATTAIMFFIWLLSYSLPSMAAYHFNLTVPHLLPDPETVAYELQRSVNNSFSRRQMQSINSSKEQSNSCQTGNPIDDCWRCETNWQANRQRLAECGIGFGRDAMGGKGGQIYIVTDSSDPDPVSPRPGTLRYAVVQDEPLWIIFSADMTIKLKYELMINSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNVWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDGFSPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVCFTLWPSFLHSVLHFAGAC 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24487977 24493445 + Sed0021437.2 Sed01g2882 702186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2882 369 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Sed01g2882 369 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Sed01g2882 369 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Sed01g2882 369 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Sed01g2882 369 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Sed01g2882 369 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Sed01g2882 369 PANTHER PECTATE LYASE 18-RELATED 22 350 IPR045032 GO:0030570(InterPro)
Sed01g2882 369 Gene3D - 73 358 IPR012334 -
Sed01g2882 369 SMART amb_all 148 345 IPR002022 -
Sed01g2882 369 Pfam Pectate lyase 155 325 IPR002022 -
Sed01g2882 369 SUPERFAMILY Pectin lyase-like 58 354 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2882 Sed-Chr1:24487977 Sed06g2021 Sed-Chr6:44316771 4.60E-156 dispersed
Sed01g2881 Sed-Chr1:24487977 Sed01g2882 Sed-Chr1:24487977 9.20E-208 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2882 K01728 - csv:101207535 645.195