Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2883 ATGGCGTCGTCCAAGGGCAAGGGGATCGCCGATAGCACCCCCTCCGGAAAGCGCAAGCTTCGCGATGACACCAATTCCTCCGCCGCTCGCAAGAGGAGGGACCGCAGCGTCCTCCAGTTCTTCGAGGATTTCGCTCCCGAAGTCGGCGCCGACACCGACGACGACGAGGACGACAGCGATTTTCTCAATGATTTCATGGAGGAAGAATTTGAGCAAATACCAGCATTTAATAATGATGCTGCAAAAGCTCAAAATATTCCATTCTTCCCAAAAGAAGAGGAGCTAAATGAAGAAGAATTTGATAGAATGATGGAGGAACACTACACTCGAGGTTCTGGACCTAGTACATTTGCTGAAGAAAATTATGAGAACAAAAATTCCACTGGAAGAAACCCTCCTCAGCAGATTCCCAGGGATACCATCTCTCTGTGGAAGGTTAAATGCATGGCTGGGCGTGAGCGGCATTCAGTTTTTTGTCTCATGCAAAAATTTGTTGATTTGAACTCCTTCGGTACCAAGCTACAGATAAAATCTGCATTTTGTGTGGAGCATATAAAAGGTTTTATTTACATAGAAGCTCCAAGGCAGTATGATTTAATTGAGGCTTGTAAAGGCATAAGTGGAATATATTCTACCCGTATAGCTTCTGTTCCTGAAAATGACATCTCTCAGTTGCTTACTGTTCGAAGTAGAGTCAGTGAAGTTGCTGTGGGTACCATGGCCCGTGTAAAAAGTGGAAAATACAAGGGAGACCTTGCTCAGATTGTTGCTGTCAATAATGCACGCAAGAGAGCAACAGTGAAGCTCATTCCCCGGATTGATCTTCAAGCTATGGCTGAAAAATTTGGTGGAGGTGTTCCTGCTAAGAAAATTGCCAATAAAACTGCCAATCCTGCACCACGATTGATCAACTCCAGCGAACTTGAGGAATTTCGACCACTCATGCAATTTAGACGCGACCGTGAAACCGGAAAGCTTTTTGAGTTTCTAGATGGGATGATGCTCAAGGATGGATATCTATTCAAAAGAATATCTTTAGATTCATTAAACTGCTGGGGTGTGACACCATCTGAAGATGAACTCTTAAAGTTCAAGCCTCCTGAGAGCAACGAAGCTAAGGATCTAGAGTGGCTCTCTCAACTTTATGGTGAAAAGAAGAAAAATAAGACTATAAGGACTGAAAAGGGGGGTGGAAAAGGAGAGGGCTCATCTGGGTCTAGTGCCATGAACAGCTTGGGAGATCATGATCTTGTTTGTTTTGGCCGGAAAGATTTTGGGATGATATTAGGGACGGAGAAAGATGATAGTTACAAGATTTTGAAGGAAGGCCCTGCTGGATCTGTTGTGGTGAATGTGCAACGGAAAGAGTTGAAAAGTGGGTCTTTAGATGCTAAATTTACTGCTGTTGATCACAATGGAAAGATCATCTCAGTTTCAGATAATGTCAAGGTTTTGGAAGGGCCATTAAAGGATAAACAAGGCATTGTTAAGCATGTATACAGACACACGGTGTTTGTATATGATGAGAATGAGGTGGACAACGATGGTTATTTCTGCTGCAAATCTAATTTGTGTGAGAAAATCAAGATTTCTTTTGATGCTCCTGGTGGAAAGGAGGATGACAAGGGTTTCTCTGGTTTTGAGGATTTCTCCTCCTCTCCCAAGTCACCTCTATCTCCTAAGAAGCCATGGGCAGAGAAGGAGGGTCGTGAGTACAACCGTGATGACAAAGGAGATGGAATGTTCTCCATTGGTCAAACTTTGAGAATACGCGTTGGTCCTTTAAAGGGATACCTATGTCGTGTTATAGCTGTACGTAAAAAAGATGTTACAGTGAAGCTCGATTCGCAACAGAAGGTTCTTACAGTTAGATCTGATTTTCTTTCGGAGGTACAGAAAAAGAGCTCTGCCGTGCCTCTTAGTGAGGATCCAGAATCTGCTTCTCTAAAACCATTTGATATACTGGGAAATGAAGGCAGCTCCCAAGATTGGATGGGCGGTACGGGGTCATCTGCAGGTGGTGATGGCTGGAATTCTGCTGGGCCTTCTTCAGAAAGAAATGCTTGGCCCAGTTTCCCCGAGTCTGGTACCTCGAATTGTCCAGGGTCCAGTTCCACGAATCCTTTTGGTTCTGAAAGTCTTGATGCTAAAAAAGATGTTGAAGATTCTCCTTGGGCTAGCAAGTCAACTCCAGCTGCAACTGCAAGCACTGCCTGGGGCGCTGCAAAATCAAGTGTTGATACTGCTAATGATGGTCAAGCCTGGGGAAAGAGCGAGTCATGGGACAAAGCTACTGCTAAATCTAGTTCAGATGAAAATGCCTCTGGTGGTTGGGGCAAAACCGTAGTACCTAGTGGAGATTCTGCAGGCTTCACAGAACATGCTGACGACAAATGGGACAAAGGGAAGCATGTATCTTCTGATAATCAGACTGGCAACTGGGGCAGTGGAAGTTCCGGAAAGAATGAAGTCAGTGCATGGAACAGCGATAAAAATTCAGAACCTGGGGGGTGGAAAAAGAGTCTAACTGCTAGTTTTGGTGATAACAGTGCTCCAGCAGAAACCTCATCTGATAAGTGGGGTAGCAAAAGTAAATCAAGTGGAGGCTGGGGTGATCAGAATGCTTCAACCACCGTTTCTGAGATTCAGCCAGCTGGCAAAGACAATGTAGGTGGCTGGGACAAACCAGTGGCAGAAAATAAGATCAGTTCAACTAGCTGGAATGAAGACACTTCAATGAAGGAAAGTCAAACATCGAACTGGGGTAACAAGGACGAGGCTGGTGGTTGGGGTAAGCCAAAGAATGTGGGTGATGGTGGAAGTTCTGCTTGGAATAAATCTGCCGCCAGTGGAGTTGGAAAGAACGAAAGTGGTAAAGATGACAGTGGTTGGAATGTTGGAAAGACTTCCGGTGGAGATTCTGCATCTGGATGGGGTCAGACCACCAAGGAAGCTGGTTCTAGTGAGCAAGGGGGCAGTTGGGGTTCCAATTGGAAAAAAAGTTCTGATGCTGGAAATGAAGATTCCAGTTTGGGCAAGAAAAGTGACTGGAGTTCTGGAGGTGGCAGTTCTAACTGGGGCGAGAAAAGCAACTGGAACTCAGGAAATGGTTCTGAAACTCAGATGGAAGGAGATCGTAATGATAGAGGAGGCTTTAGAGGTAGAGGTGGTTTTAGAGGAAGGGGCGAAAGGGGCCGGTTTGGTGGTAGAGGTAGATCTGATAGAGGTGGTTTTGGTAGAGGCGGATCAGACAGAGGAGGATTTGGAGGCAGAGGCAGTGGGAGATGGAATAGTGAAGGTGGTTCAAATGATGGCGAGAATAAAGGATGGAGTAGTACAAACGACGGAGACAACAAAGGCTGGAGTAGTGGTGGCGGCAGTGGCGGAGACAACAAAGGCTGGAGTAGTGGTGGCAGCAGTGGCGGAGACAACAAAGGCTGGAGTAGTGGTGGCGGCAGTGGCGGAGACAACAAAGGCTGGAGTAGTGGTGGCGTCAGTGGCGGAGACAACAAAGGCTGGAGTAGTGGTGGTGGCAGTGGCGGAGACAACAAAGGCTGGAGTAGTGGTGGCAGCAGTGGCGGAGACAATAAAGGCTGGAGTAGTGGTGGCGGAGACAACAAACACTGGAGTAGTGGTGGCGGAGATAACAAAGGCTGGAGTAGTGGTGGCGGAGATAACAAAGGCTGGAGTAGTGGTGGTGGCGGAGATAACAAAGGCTGGAGTAGTGGTGGTGGCGGAGATAACAAAGCTTGGAGTAGTGGTGGTGGCGGAGATAACAAAGGCTGGAGTAGTGGTGGTGGCGGAGATAACAAAGCTTGGAGTAGTGGTGGTGGCAGTGACAATAAAGGCTGGAGTAGTGGTGGCGGCGGCGATGAGGAGAAATCTGGTTCGGATCGAGGAGGATTTGGTGGCCGAGGTGGGAGAGGACGTGGAAGATGGAATAGTGAAGGGGGTTCTAATGATGGTGAGAATCGAGGTGGTTTTAGAGGCCGTGGCCGTGGAAGGTGGAACCAGGAAGGTGGTTCACAAGATGGTGACAATGGAGGAGGGTGGAGTGGTGGTAGAGGTGGATATGGAGGAAGAGGCCGTGGAAGATGGAATCAAGATGGTGGTTCAAATGACGGTGGTGACAGTGGAGGATGGAGTGGCGGTGGAAGCTGGGACAAGTCTCAATCTGATCGAGGTGGCTTTGGAGGCCGAGGTCGAGGCCGAGGCCGTGGAAGATGGAATCGAGAAGGTGATTCGAATGATGGTGACAATGGAGGAGGAGGTGGAGGTGGAGGTTGGAGCAGCAGTGGTGGTAGCTGGGGGAACTCTGGATCAGACAGAGGGGGGTTTGGAGGTAGAGGCTCTGGAAGATGGAGCCAAGAAGGTGGTTCAAATAACGGTGACTCTGGAGGATGGAGTGGAGGAGGTGGCGGCGGCGGGTGGAAGTCTGGATCAGATAGAGGCGGATTTGGTGGTCGAGGTCGAGGCCGTGGAAGGAGAAATCAAGATGGTAGTTCAAATGATGGTGACAATGAGGATAAACCTGCAAGCTGGAGCACTGGTTCTGGTAACACTGGAGGATGGAGCAGTGGTGGTGGTGCAGGGTCCTGGAATCAAGGAGGTGATGAGAAGAACCAGCAGCCGAGTTGGAAGTCGAGCAATGAAAGTGGTGACAAATCATCTGGCGGTCAAGGATCAGGCTGGAAGGCACCAGGTGGGAATGATCTCGGTAATTGGAAATCATCTGGTTCTTCTGGTGTGGATCATGATTCTGGCTGGAATAAATCAACTGCTGGTGAAAAGATGGATACCCAAGGCGGAGGCTGGCAGAAGTCAGCATCTGGTTGGAATGGAGGAACTGAGAATCAAACAGCAAAGAAGGAGGTGAATACAGGTGGTAACGATGGAGGTTGGGGGAAGCCTGCTTCTGGTTGGAATGATCAAAGTGGAAATCAGGCTAAAAATTGGAAACCTTCAGAGACTTCTGGTGAGGGTCAAAGCTCTACCCAGGCAGGAGGAGGAGGAGGGGGTTGGAACAAGCCTACGTCCAGTAGCGATACCAACGCAGGAGGTTGGGGGAAGCCGCCCATGGACAAGGAAGCCGACAGTAGCAATAAGGGCAGCTGGAACAAAGATGATGCTAATGCAGGTGCTGAAGGAGGAGGGGGTTGGAACAAGGCTTCGTCCAGTAGCGATGCTTCCGGTTGGGGTAAATCCAGTTCTGCAAACGATGGCAAGTCGTCATCTGGTTGGTGA 5244 48.53 MASSKGKGIADSTPSGKRKLRDDTNSSAARKRRDRSVLQFFEDFAPEVGADTDDDEDDSDFLNDFMEEEFEQIPAFNNDAAKAQNIPFFPKEEELNEEEFDRMMEEHYTRGSGPSTFAEENYENKNSTGRNPPQQIPRDTISLWKVKCMAGRERHSVFCLMQKFVDLNSFGTKLQIKSAFCVEHIKGFIYIEAPRQYDLIEACKGISGIYSTRIASVPENDISQLLTVRSRVSEVAVGTMARVKSGKYKGDLAQIVAVNNARKRATVKLIPRIDLQAMAEKFGGGVPAKKIANKTANPAPRLINSSELEEFRPLMQFRRDRETGKLFEFLDGMMLKDGYLFKRISLDSLNCWGVTPSEDELLKFKPPESNEAKDLEWLSQLYGEKKKNKTIRTEKGGGKGEGSSGSSAMNSLGDHDLVCFGRKDFGMILGTEKDDSYKILKEGPAGSVVVNVQRKELKSGSLDAKFTAVDHNGKIISVSDNVKVLEGPLKDKQGIVKHVYRHTVFVYDENEVDNDGYFCCKSNLCEKIKISFDAPGGKEDDKGFSGFEDFSSSPKSPLSPKKPWAEKEGREYNRDDKGDGMFSIGQTLRIRVGPLKGYLCRVIAVRKKDVTVKLDSQQKVLTVRSDFLSEVQKKSSAVPLSEDPESASLKPFDILGNEGSSQDWMGGTGSSAGGDGWNSAGPSSERNAWPSFPESGTSNCPGSSSTNPFGSESLDAKKDVEDSPWASKSTPAATASTAWGAAKSSVDTANDGQAWGKSESWDKATAKSSSDENASGGWGKTVVPSGDSAGFTEHADDKWDKGKHVSSDNQTGNWGSGSSGKNEVSAWNSDKNSEPGGWKKSLTASFGDNSAPAETSSDKWGSKSKSSGGWGDQNASTTVSEIQPAGKDNVGGWDKPVAENKISSTSWNEDTSMKESQTSNWGNKDEAGGWGKPKNVGDGGSSAWNKSAASGVGKNESGKDDSGWNVGKTSGGDSASGWGQTTKEAGSSEQGGSWGSNWKKSSDAGNEDSSLGKKSDWSSGGGSSNWGEKSNWNSGNGSETQMEGDRNDRGGFRGRGGFRGRGERGRFGGRGRSDRGGFGRGGSDRGGFGGRGSGRWNSEGGSNDGENKGWSSTNDGDNKGWSSGGGSGGDNKGWSSGGSSGGDNKGWSSGGGSGGDNKGWSSGGVSGGDNKGWSSGGGSGGDNKGWSSGGSSGGDNKGWSSGGGDNKHWSSGGGDNKGWSSGGGDNKGWSSGGGGDNKGWSSGGGGDNKAWSSGGGGDNKGWSSGGGGDNKAWSSGGGSDNKGWSSGGGGDEEKSGSDRGGFGGRGGRGRGRWNSEGGSNDGENRGGFRGRGRGRWNQEGGSQDGDNGGGWSGGRGGYGGRGRGRWNQDGGSNDGGDSGGWSGGGSWDKSQSDRGGFGGRGRGRGRGRWNREGDSNDGDNGGGGGGGGWSSSGGSWGNSGSDRGGFGGRGSGRWSQEGGSNNGDSGGWSGGGGGGGWKSGSDRGGFGGRGRGRGRRNQDGSSNDGDNEDKPASWSTGSGNTGGWSSGGGAGSWNQGGDEKNQQPSWKSSNESGDKSSGGQGSGWKAPGGNDLGNWKSSGSSGVDHDSGWNKSTAGEKMDTQGGGWQKSASGWNGGTENQTAKKEVNTGGNDGGWGKPASGWNDQSGNQAKNWKPSETSGEGQSSTQAGGGGGGWNKPTSSSDTNAGGWGKPPMDKEADSSNKGSWNKDDANAGAEGGGGWNKASSSSDASGWGKSSSANDGKSSSGW 1747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24494958 24504483 - Sed0007773.1 Sed01g2883 702187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2883 1747 CDD KOW_Spt5_4 480 521 IPR041977 -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 791 805 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 899 924 - -
Sed01g2883 1747 FunFam Protein RNA-directed DNA methylation 3 565 634 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1573 1626 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1011 1041 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 632 1747 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1042 1079 - -
Sed01g2883 1747 Pfam Early transcription elongation factor of RNA pol II, NGN section 142 226 IPR005100 -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1268 1282 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 41 60 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 561 578 - -
Sed01g2883 1747 Gene3D - 566 635 IPR014722 -
Sed01g2883 1747 SMART kow_9 475 502 IPR005824 -
Sed01g2883 1747 SMART kow_9 234 261 IPR005824 -
Sed01g2883 1747 SMART kow_9 581 608 IPR005824 -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 543 578 - -
Sed01g2883 1747 Gene3D - 138 235 IPR036735 GO:0006354(InterPro)
Sed01g2883 1747 MobiDBLite consensus disorder prediction 114 137 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1720 1747 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 388 408 - -
Sed01g2883 1747 CDD NGN_Euk 142 227 IPR039385 -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1640 1686 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 12 36 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1 36 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 107 137 - -
Sed01g2883 1747 PANTHER SUPPRESSOR OF TY 5 3 1021 IPR039659 GO:0003729(PANTHER)|GO:0006357(InterPro)|GO:0006368(PANTHER)|GO:0032044(PANTHER)|GO:0032784(InterPro)
Sed01g2883 1747 CDD KOW_Spt5_1 238 275 IPR041973 -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 806 884 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 661 712 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1488 1506 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1507 1559 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 727 755 - -
Sed01g2883 1747 Gene3D - 236 276 IPR014722 -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 1096 1227 - -
Sed01g2883 1747 MobiDBLite consensus disorder prediction 962 1005 - -
Sed01g2883 1747 Pfam KOW motif 237 268 IPR005824 -
Sed01g2883 1747 Pfam KOW motif 479 507 IPR005824 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2883 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2883 Sed-Chr1:24494958 Sed11g1326 Sed-Chr11:29002001 2.40E-77 dispersed
Sed01g2883 Sed-Chr1:24494958 Sed03g0455 Sed-Chr3:2736317 1.30E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009324 0 2 1 1 1 1 2 1 1 0 1 1 2 0 2 2 1 2 2 1 1 0 1 1 1 1 1 1 1 1 33