Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2916 ATGGCGGCCCCCAATGACGATGATGAGGGCAACAAAATGGAGGGTTGGCTGTATCTCATCCGCTCCAACCGCTTCGGCCTCCAGTACTCCCAGAAGAGATACTTCCTTCTTCACCATTCCCGCCTCAACAGCTTCAAATCCATTCCTCTTTCTGCAAATCAGGAACCAAATAGAAGTGCAGTGATTGATTCCTATATTCGTGTTACAGATGATGGAAGGGAGAGTATTCATAGAAAAGTATTCTTCATCTTTACACTTTTTAATACCGTCAATCAAAATGATCAACTTAAGTTGGGAGCCAGCAGCCCAGAAGATGCAGCAAGATGGATCCGCTCGCTGCTCGATACTACATTGAAGGACTGTCCGGATCCAACAAGGAATTTTAGGGATCACTCCAAGAGACAGTGTCCAGCTTTGAGGCTTCGAGGGTCAAAAAGAATGGACTGTAAACCTTCAACAGACTGGACTGTATGTTCCTCTGTACAAATGGAAGCAATGACATCTGATGTTATTGCACCTTCCCCTTGGAAAATTTTTGGCTGTCGGAATGGGTTGCGACTTTTCAAAGAAGCAAAAGATAGCGACTCCCATCGTAGGCAATGGGATGATCATCCTGCTATAATGGCAGTTGGTATGGTTTGTGGAACTTCAGAAGAAATTTTTCGGACCATTATGTCTCTTGGTCCATCAAGATCAGAATGGGATTTTTGCTTCTTCCGTGGAAATTTGGTTGAACACCTTGATGGCCATACAGATATCATACACATGCAATTATATCGAGATTGGCTACCTTGGGGGATGAAGAAAAGAGATTTTCTTTTGCGTCGTTATTGGAGAAGGGAAGATGATGGCACATATGTGATACTATATCATTCTATGTTTCACGTGAAGTTTCCACCACAGAAAGGCTACGTCCGTGCTTGCCTTAAAAGTGGAGGATACGTTATAACTCCAGTAGACCAAGGTAAACATTCGCTAGTAAAACACATGCTTGCAATTGATTGGAAGTTTTGGAAACTGTATCTGCGCCCTTCATCTGCAAGAACGATTACTATTCGGATGCTAGAGAGGCTTGCAGCACTAAGAGAGCTATATGGAGCCAAGGTTGGTGACTCTTCCTCTGAGTTCTCGTCATCTAGTAGAGACCTTAGACACTTCGAGATTCCCCAGAGCGAAATGGACGAGATAAAGACAGAAATACAATCTCCTGAAGAAATGAGGAAAATTAAAGAGGCATTTTCAAAAGAGAATGAAGTGGAAATGATGCCCCGTGCTAATTTGATGGGATTAAATGATGCTGTGGATGAGTTCTATGATGTTCCTGAACCTACAGAATTAGACCATTATGAGAATGAATGGTCAGACGACTCAGCTTTGATTCAGCAGCACTCTTCGACCAAACTATCATCAGCGGCTGGTTTCGTGAAAAAGTTGCATGACCTTGCTGTTCAGAAGAAGGGCTATTCAGAATTACCTGAGTTGGAAGAAAGTATGCCATGCTCCTATGGATCTACCCTTCCAAAAGATCTTACTCATTCTTCTCCCTGCAGTGTGGCATCATCAGATCCCTCTTTGTTTCTGATACGTGGAGTAAACTATTTGAAAGACAGCCAGAAGATCAAAGCAAATGGCACTTTGATGCAACTGGCTGGTGCAGACTGGCTAAGGTCAGACAGACGAGAAGACAATCTTAGTGGGCGTCTGGGTGGTATTGTTCAGAAATATGCCGAACAAGGTGGACCGGAATTCTTCTTCGTAGTTAACATACAAGTTCCTGGCACGACAATGTACACGTTGGCAATGTACTACATGCTGAGGACTCCTCTCGACAGCAGTCCCTTGCTCAAAAGTTTTGTTGAAGGAGATGATGCCTTCAGGAATTCGAGATTTAAGCTCATACCTTATATTTCTCAGGGATCATGGATAGTTAAGCAAAGTGTTGGAAAGAAAGCGTGCTTGATCGGCCATGCACTTGAAGTACATTACTTTCGTGGGAAAAACTATTTGGAGGTTGAAATTGATGTTGGCTCTTCAACAGTGGCCAGGGGAGTGGTGAGCCTTGTTCTTGGTTATTTGAACAATTTGGTCATAGAAATGGCTTTTGTAATTCAGGGCAACACGCAGGAGGAGCTCCCCGAAATCCTTCTCGGGACGTGTCGACTCAATCATTTGGATGTGGCTAAATCACTCCTGGTAAAGCCATGA 2205 43.58 MAAPNDDDEGNKMEGWLYLIRSNRFGLQYSQKRYFLLHHSRLNSFKSIPLSANQEPNRSAVIDSYIRVTDDGRESIHRKVFFIFTLFNTVNQNDQLKLGASSPEDAARWIRSLLDTTLKDCPDPTRNFRDHSKRQCPALRLRGSKRMDCKPSTDWTVCSSVQMEAMTSDVIAPSPWKIFGCRNGLRLFKEAKDSDSHRRQWDDHPAIMAVGMVCGTSEEIFRTIMSLGPSRSEWDFCFFRGNLVEHLDGHTDIIHMQLYRDWLPWGMKKRDFLLRRYWRREDDGTYVILYHSMFHVKFPPQKGYVRACLKSGGYVITPVDQGKHSLVKHMLAIDWKFWKLYLRPSSARTITIRMLERLAALRELYGAKVGDSSSEFSSSSRDLRHFEIPQSEMDEIKTEIQSPEEMRKIKEAFSKENEVEMMPRANLMGLNDAVDEFYDVPEPTELDHYENEWSDDSALIQQHSSTKLSSAAGFVKKLHDLAVQKKGYSELPELEESMPCSYGSTLPKDLTHSSPCSVASSDPSLFLIRGVNYLKDSQKIKANGTLMQLAGADWLRSDRREDNLSGRLGGIVQKYAEQGGPEFFFVVNIQVPGTTMYTLAMYYMLRTPLDSSPLLKSFVEGDDAFRNSRFKLIPYISQGSWIVKQSVGKKACLIGHALEVHYFRGKNYLEVEIDVGSSTVARGVVSLVLGYLNNLVIEMAFVIQGNTQEELPEILLGTCRLNHLDVAKSLLVKP 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25025520 25033538 + Sed0024027.1 Sed01g2916 702220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2916 734 CDD PH 13 113 - -
Sed01g2916 734 Gene3D - 176 373 IPR023393 -
Sed01g2916 734 ProSiteProfiles PH domain profile. 10 118 IPR001849 -
Sed01g2916 734 Pfam PH domain 12 114 IPR001849 -
Sed01g2916 734 ProSiteProfiles START domain profile. 155 350 IPR002913 GO:0008289(InterPro)
Sed01g2916 734 SUPERFAMILY Bet v1-like 163 338 - -
Sed01g2916 734 CDD START 164 367 - -
Sed01g2916 734 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 22 731 IPR045096 -
Sed01g2916 734 FunFam Pleckstrin homology (PH) and lipid-binding START domains-containing protein 175 373 - -
Sed01g2916 734 Gene3D - 5 119 IPR011993 -
Sed01g2916 734 Pfam START domain 202 338 IPR002913 GO:0008289(InterPro)
Sed01g2916 734 SMART START_1 160 368 IPR002913 GO:0008289(InterPro)
Sed01g2916 734 SMART PH_update 11 120 IPR001849 -
Sed01g2916 734 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 520 725 IPR009769 -
Sed01g2916 734 SUPERFAMILY PH domain-like 8 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2916 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2916 Sed-Chr1:25025520 Sed02g0035 Sed-Chr2:4870197 1.10E-95 dispersed
Sed01g2916 Sed-Chr1:25025520 Sed03g0701 Sed-Chr3:4231300 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g620 . . . . Bpe02g01270 . . . Cmo05g00342 Cmo12g00326 . Cma05g00340 Car09g00339 Car12g00357 Sed01g2916 Cpe07g00331 Cpe06g00278 Bhi04g00071 Tan02g2782 Cmetu03g0233 . Hepe10g0204 . Lcy13g1846 Cla05g01657 Cam05g1768 Cec05g1775 Cco05g1834 Clacu05g1758 Cmu05g1643 Cre05g1772 . Cone7ag1647 Cone17ag0966 Cone20ag0307 Lsi04g01359 . . Cme03g01560 . . . . . . . Bma02g00004 . . Cmo09g00392 . Cma12g00373 . Car05g00285 Cpe11g00285 . Bhi09g03046 Tan01g3525 Cmetu07g0269 . Hepe01g1941 Mch11g0477 . Cla08g01379 Cam08g1850 Cec08g1428 Cco08g1561 Clacu08g1545 . Cre08g1328 Lsi08g01263 . Chy03g01070 Cme07g00148
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004291 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 2 2 43