Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2954 ATGAGCTGCGATCTCCCCTTCCCCTCCCCCGACCTCGCCCCTCCCGCCTTCGACGGCGTTCACCGCAGGAAGAGGATGCCGAGGCTGCGCCGATCCCCTTCCCATCTTCATCACTTCTCCTTCCCCCCTCCTCCTCCTCCTCTCCTCCTCCCTTCCCCACGGGTAATTGATCCAAGGAAACTGAAGTTTCTTTTTCAGAAGGAGCTGAGGAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAGCTTTGGAGTCTAAAGAGGGGATCGTAATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTTAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGGGACTTTGTCAATGCCCATGGCTTACAACTGGGAGATTTCATCATGATTTACCAAGATTTTGAAGAACACAGCTATGTAATTCAAGCAAAAAAGGCTTCTGATCAAGAAATATTTTCGGACATTGCAAATAATGGTATGATCAATGACGACATTGCCTTTCAAGAATATGATGCTAGCAAGGCTGCCAGCTCCATATACGTGCCTAGTCCAACCATGGAGGATCCAGTGTCGTCGTTCATCTACGACACCAGTTCTGCCTTCGACAACGATTCAGCCTTTGACTTTATGAGTGGCTTGATGACCAACTACTCGAGAATGGGAAGTCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCCCTCGACGACTTCTACTAA 777 47.62 MSCDLPFPSPDLAPPAFDGVHRRKRMPRLRRSPSHLHHFSFPPPPPPLLLPSPRVIDPRKLKFLFQKELRNSDVSSLRRMILPKKAAETHLPALESKEGIVITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMIYQDFEEHSYVIQAKKASDQEIFSDIANNGMINDDIAFQEYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSAFDFMSGLMTNYSRMGSLEGFGSVENLSLDDFY 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26044011 26049640 - Sed0020804.1 Sed01g2954 702258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2954 258 FunFam B3 domain-containing transcription factor FUS3 61 175 - -
Sed01g2954 258 ProSiteProfiles B3 DNA-binding domain profile. 65 167 IPR003340 GO:0003677(InterPro)
Sed01g2954 258 CDD B3_DNA 63 165 IPR003340 GO:0003677(InterPro)
Sed01g2954 258 Pfam B3 DNA binding domain 65 163 IPR003340 GO:0003677(InterPro)
Sed01g2954 258 SUPERFAMILY DNA-binding pseudobarrel domain 63 160 IPR015300 -
Sed01g2954 258 Gene3D - 61 178 IPR015300 -
Sed01g2954 258 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 56 172 IPR044800 GO:0003700(InterPro)
Sed01g2954 258 SMART B3_2 65 167 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2954 Sed-Chr1:26044011 Sed09g0874 Sed-Chr9:28432319 1.10E-31 dispersed
Sed01g2954 Sed-Chr1:26044011 Sed03g0931 Sed-Chr3:5769766 2.90E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37329 PF02362 B3 6.90E-18 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2954 K09287 - csv:101222512 377.867