Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2969 ATGGGACCGCGCATTTCCACTCGAGTGGCGCCACATGCTTTGAACAATCTGACTCTGAGTGTGACTCTATTTAAGGCCCCTCCCCTTCTTGTTCTTGGTTCACCCTTGTTTTTTCTGTTTTCTGCTGGTTCCGATTCGGATCCAACCATGGTTTTGTCGAAGACTGCTTCGGAGTCGGATGTGTCCATCCACTCCACGTTCGCCTCTCGCTACGTCCGGACGTCTCTCCCGAGGTTCAAAATGCCCGAAAACTCGATCCCGAAGGAGGCTGCGTTCCAGATCATAAACGATGAGCTGATGCTGGATGGGAACCCGCGGCTGAATCTGGCGTCCTTCGTCACCACGTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCTCCATTAACAAGAACTACGTCGATATGGATGAATATCCCGTCACTACAGAGCTCCAGAATCGGTGTGTGAACATGATAGCTCATTTGTTCAATGCGCCATTGGGTGATTCTGAGACGGCTGTGGGGGTTGGGACAGTGGGATCCTCAGAGGCCATAATGCTGGCTGGTTTGGCTTTCAAGAGAAAATGGCAGAACAGAAGAAAGGGTGAAGTCAAGCCCTATGACAAACCCAACATTGTCACTGGAGCCAACGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAGGTGAAACTGAGGGAAGGTTACTATGTGATGGATCCAGAAAAGGCTGTGGAGTTGGTGGATGAGAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAACGATCTCTTGCTCGAGAAGAACAAGGAAACCGGATGGGACACTCCTATTCATGTGGATGCTGCGAGTGGAGGGTTCATTGCTCCTTTCATTTACCCTGAGCTAGAATGGGACTTCAGGCTTCCCCTTGTGAAGAGCATTAATGTGAGTGGCCATAAGTATGGGCTTGTCTATGCTGGAATTGGTTGGGTCATCTGGAGAAACAAGGAAGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGGGCTGACCAACCCACTTTCACCCTTAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAGAGAAAACATGTTGGTTCTCAAGGAAGGGCTCGAGAAAACTGGGCGTTTCAACATTGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACTCGCCACAATGAGTTCGAAGTCTCAGAAATGCTGCGGCGATTTGGCTGGATTGTGCCTGCTTACACCATGCCTCCAGACGCACAGCACATCACAGTTCTCAGAGTTGTCATTAGAGAAGATTTCTCTCGCACACTTGCCGAGCGTCTAGTGCACGACATTGAAAAGACGTTGCACGATCTCGAAAGCCTCCCGTCGAAGGCCGATGTCATGACTACAGTGGCTGGAGAAGAGACGCAGCACAACAACATCGTCGTGGCGAAGAAGAGCGCGCTCGAAAAGCAGAGGGAGATCACGAATGTTTGGAGGAAGTTTGTTATGGAGAAGAAGAAGACTAATGGAGTTTGTTAG 1647 48.94 MGPRISTRVAPHALNNLTLSVTLFKAPPLLVLGSPLFFLFSAGSDSDPTMVLSKTASESDVSIHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKGEVKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLLEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCRENMLVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDNTRHNEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVHDIEKTLHDLESLPSKADVMTTVAGEETQHNNIVVAKKSALEKQREITNVWRKFVMEKKKTNGVC 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26932498 26943816 + Sed0004429.1 Sed01g2969 702273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2969 548 FunFam Glutamate decarboxylase 50 114 - -
Sed01g2969 548 FunFam Glutamate decarboxylase 115 409 - -
Sed01g2969 548 CDD DOPA_deC_like 108 488 - -
Sed01g2969 548 Gene3D - 50 114 - -
Sed01g2969 548 PANTHER GLUTAMATE DECARBOXYLASE 50 548 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Sed01g2969 548 Gene3D - 410 497 - -
Sed01g2969 548 Gene3D - 115 409 IPR015421 -
Sed01g2969 548 Pfam Pyridoxal-dependent decarboxylase conserved domain 82 430 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Sed01g2969 548 FunFam Glutamate decarboxylase 410 497 - -
Sed01g2969 548 NCBIfam glutamate decarboxylase 65 493 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Sed01g2969 548 SUPERFAMILY PLP-dependent transferases 65 494 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2969 Sed-Chr1:26932498 Sed03g1065 Sed-Chr3:6465532 1.60E-237 dispersed
Sed01g2969 Sed-Chr1:26932498 Sed01g2970 Sed-Chr1:26932498 1.90E-278 tandem
Sed01g2969 Sed-Chr1:26932498 Sed03g0897 Sed-Chr3:5565001 6.90E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2969 K01580 - csv:101216119 972.615